*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, 2012 9KSNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Barley, 2012 9KSNP 7H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, 2012 9KSNP [ View Map Set Info ]
Map Name: Barley, 2012 9KSNP 7H
Map Start: 0
Map Stop: 141.4
Features by Type:
559 locus
559 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 559.       Previous | of 23 | Next
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA2_0722 locus 17.5 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA2_0722 locus 19.25 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA2_0722 locus 19.25 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA2_0722 locus 13.7 () Automated name-based View Maps
POPA1_0965 locus 23.3 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0965 locus 29.82 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0965 locus 24.15 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA1_0965 locus 29.82 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0965 locus 29.66 () Automated name-based View Maps
POPA2_1528 locus 42.5 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA2_1528 locus 46.19 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA2_1528 locus 38.99 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA2_1528 locus 46.19 () Automated name-based View Maps
POPA1_0368 locus 42.3 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0368 locus 38.57 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0368 locus 44.33 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0368 locus 45.71 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA1_0368 locus 45.71 () Automated name-based View Maps
POPA1_0979 locus 41.4 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA1_0979 locus 43.38 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0979 locus 36.92 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0979 locus 39.83 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0979 locus 43.38 () Automated name-based View Maps
POPA3_0065 locus 40.4 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA3_0065 locus 39.83 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA3_0065 locus 42.6 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA3_0065 locus 42.6 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA3_0065 locus 36.26 () Automated name-based View Maps
POPA3_0143 locus 41.4 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA3_0143 locus 45.71 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA3_0143 locus 45.71 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA3_0143 locus 38.57 () Automated name-based View Maps
POPA3_0329 locus 23 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA3_0329 locus 28.27 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA3_0329 locus 29.66 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA3_0329 locus 22.84 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA3_0329 locus 28.27 () Automated name-based View Maps
POPA3_0780 locus 24.1 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA3_0780 locus 29.82 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA3_0780 locus 29.82 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA3_0780 locus 24.81 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA3_0780 locus 29.66 () Automated name-based View Maps
POPA3_0894 locus 34.2 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA3_0894 locus 31.35 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA3_0894 locus 37.55 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA3_0894 locus 37.55 () Automated name-based View Maps
POPA3_0895 locus 34.3 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA3_0895 locus 37.55 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA3_0895 locus 31.35 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA3_0895 locus 37.55 () Automated name-based View Maps
POPA3_1305 locus 38.8 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA3_1305 locus 34.15 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA3_1305 locus 40.96 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA3_1305 locus 40.96 () Automated name-based View Maps
POPA3_1351 locus 23.7 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA3_1351 locus 29.82 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA3_1351 locus 29.82 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA3_1351 locus 29.66 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA3_1351 locus 24.15 () Automated name-based View Maps
POPA1_0050 locus 60.8 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0050 locus 63.66 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0050 locus 57.57 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA1_0050 locus 63.66 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0050 locus 63.05 () Automated name-based View Maps
POPA2_0113 locus 50.7 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA2_0113 locus 49.61 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA2_0113 locus 56.81 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA2_0113 locus 56.81 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA2_0113 locus 55.37 () Automated name-based View Maps
POPA2_0195 locus 66.1 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA2_0195 locus 71.1 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA2_0195 locus 71.1 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA2_0195 locus 67.02 () Automated name-based View Maps
POPA1_0431 locus 65.4 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0431 locus 71.1 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0431 locus 67.02 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA1_0431 locus 71.1 () Automated name-based View Maps
POPA2_0750 locus 61.5 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA2_0750 locus 68.46 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA2_0750 locus 61.67 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA2_0750 locus 64.14 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA2_0750 locus 68.46 () Automated name-based View Maps
POPA1_0721 locus 57.9 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0721 locus 56.25 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0721 locus 62.88 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0721 locus 61.97 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA1_0721 locus 62.88 () Automated name-based View Maps
POPA1_0726 locus 50.8 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0726 locus 51.23 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA1_0726 locus 56.81 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0726 locus 56.81 () Automated name-based View Maps
POPA1_0772 locus 48.7 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0772 locus 54.37 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0772 locus 52.03 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA1_0772 locus 54.37 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0772 locus 47.1 () Automated name-based View Maps
POPA2_0975 locus 61.8 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA2_0975 locus 63.66 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA2_0975 locus 63.66 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA2_0975 locus 62.43 () Automated name-based View Maps
POPA2_1270 locus 62 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA2_1270 locus 68.46 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA2_1270 locus 62.64 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA2_1270 locus 68.46 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA2_1270 locus 64.14 () Automated name-based View Maps
POPA2_1326 locus 46.4 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA2_1326 locus 42.26 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA2_1326 locus 48.7 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA2_1326 locus 49.68 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA2_1326 locus 49.68 () Automated name-based View Maps
POPA1_1348 locus 64 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_1348 locus 70.4 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_1348 locus 64.98 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H POPA1_1348 locus 70.4 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.