*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, CxH
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-CxH-5H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
chromband
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, CxH [ View Map Set Info ]
Map Name: Hordeum-CxH-5H
Map Start: 0
Map Stop: 272.22
Features by Type:
1 chromband
48 locus
49 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 49 of 49.       Previous | of 2
Barley - Barley, CxH - Hordeum-CxH-5H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
AWBMA32 locus 226.18 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-5H AWBMA32 locus 178.2 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H AWBMA32 locus 52 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H AWBMA32 locus 70.26 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H AWBMA32 locus 84.8 () Automated name-based View Maps
ksuD4 locus 15.73 Barley - Barley, GxH - Hordeum-GxH-5H ksuD4 locus 39.88 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H ksuD4 locus 3 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H ksuD4 locus 0 () Automated name-based View Maps
Xyl locus 170.23 Barley - Barley, GxH - Hordeum-GxH-5H Xyl locus 236.88 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H Xyl locus 151 () Automated name-based View Maps
PSR370 locus 204.85 Barley - Barley, BinMap 2005 - Hordeum-Bins-5H PSR370 locus 166 () Automated name-based View Maps
Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-5 Xpsr370-5S locus 69.4 () Automated name-based View Maps
cdo419 locus 203.11 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO419 locus 156.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO419 locus 94 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO419 locus 156.7 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 CDO419 locus 75 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo419 locus 97.6 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 CDO419 locus 198 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-C CDO0419 locus 109.4 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 cdo419 locus 72 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18 cdo419 locus 98 (cM) Automated name-based View Maps
PSR360 locus 47.05 Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr360 locus 0 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H PSR360 locus 107.56 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H PSR360 locus 27.9 () Automated name-based View Maps
PSR426 locus 144.53 Rye - Rye, Ds2 x RxL10 - Secale-Devos-5R Xpsr426 locus 61.3 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H PSR426 locus 36 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H PSR426 locus 220.37 () Automated name-based View Maps
PSR911 locus 95.51 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Xpsr911 locus 83.8 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H PSR911 locus 68.1 () Automated name-based View Maps
PSR394 locus 224.41 Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-3 Xpsr394-3S locus 23.4 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H PSR394 locus 261.5 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H PSR394 locus 84.2 () Automated name-based View Maps
csRCH4(1) locus 238.11 Barley - Barley consensus 2003 - Barley-consensus-2003-5H csRCH4(1) locus 89.5 () Automated name-based View Maps
CDO1335(A) locus 0.88 Barley - Barley, GxH - Hordeum-GxH-5H CDO1335(A) locus 59.03 () Automated name-based View Maps
CDO665(A) locus 0.88 Barley - Barley, GxH - Hordeum-GxH-5H CDO665(A) locus 59.03 () Automated name-based View Maps
ksuA1(D) locus 20.45 No other positions
ksuA1(B) locus 45.33 No other positions
PSR117(A) locus 45.33 Barley - Barley, GxH - Hordeum-GxH-5H PSR117(A) locus 99.98 () Automated name-based View Maps
BCD147(B) locus 45.33 No other positions
WG405(B) locus 46.18 No other positions
ksuA3(A) locus 47.05 Barley - Barley, GxH - Hordeum-GxH-2H ksuA3(A) locus 42.7 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-5H ksuA3(A) locus 4.96 () Automated name-based View Maps
BCD351(B) locus 79.55 Barley - Barley, GxH - Hordeum-GxH-4H BCD351(B) locus 63.03 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-1H BCD351(B) locus 154.04 () Automated name-based View Maps
PSR637(C) locus 105.97 No other positions
ABG707(B) locus 219 Barley - Barley, GxH - Hordeum-GxH-5H ABG707(B) locus 258.72 () Automated name-based View Maps
BCD339(E) locus 219.91 No other positions
BCD339(D) locus 272.22 No other positions
Centromere chromband 45.3 - 47.1 Barley - Barley, CxS - Hordeum-CxS-2H Centromere chromband 80.2 - 83 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Centromere chromband -0.5 - 0.6 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-5H Centromere chromband 5 - 50.1 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-1H Centromere chromband 41.9 - 65.4 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-1H Centromere chromband 101 - 107.1 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-6H Centromere chromband 84.6 - 117.9 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-3H Centromere chromband 14.1 - 53 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-2H Centromere chromband -0.8 - 0.6 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H Centromere chromband 81.4 - 90.2 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-3H Centromere chromband -0.1 - 0.1 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-2H Centromere chromband 76.9 - 80.9 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-3H Centromere chromband 52.2 - 62 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H Centromere chromband -6.9 - 6.9 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-2H Centromere chromband 94.6 - 115 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-4H Centromere chromband 62 - 65.5 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-4H Centromere chromband -0.1 - 0.1 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-7H Centromere chromband -1.9 - 1.8 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H Centromere chromband -3.3 - 2.6 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-1H Centromere chromband 45.5 - 59 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-7H Centromere chromband 106.8 - 114.3 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Centromere chromband -16.9 - 16.9 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-7H Centromere chromband 9.6 - 16.4 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-4H Centromere chromband 69.6 - 98.7 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-4H Centromere chromband 74.6 - 87.6 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Centromere chromband -18.7 - 18.7 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-7H Centromere chromband 73.3 - 96.3 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-6H Centromere chromband 31 - 79.6 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-5H Centromere chromband -0.5 - 1 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H Centromere chromband -9.5 - 4.9 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H Centromere chromband 107.6 - 108.5 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-3H Centromere chromband 46.1 - 107.6 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H Centromere chromband -0.1 - 0.1 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Centromere chromband -10.6 - 10.6 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-3H Centromere chromband -56.7 - 56.7 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.