*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, CxS
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-CxS-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
chromband
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, CxS [ View Map Set Info ]
Map Name: Hordeum-CxS-6H
Map Start: 0
Map Stop: 179.08
Features by Type:
1 chromband
20 locus
21 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 21 of 21.
Barley - Barley, CxS - Hordeum-CxS-6H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
CDO989 locus 160.52 Barley - Barley, BinMap 2005 - Hordeum-Bins-1H CDO989 locus 125 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H CDO989 locus 111.75 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H CDO989 locus 124.2 () Automated name-based View Maps
Barley - Barley, PxN - Hordeum-Heun-1H Xcnl.CDO989 locus 146.1 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H CDO989 locus 20.6 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H CDO989 locus 117.9 () Automated name-based View Maps
PSR167 locus 51.05 Barley - Barley, SxM - Hordeum-NABGMP1-6H PSR167 locus 1.5 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H PSR167 locus 1.7 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A psr167 locus 1.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 PSR167 locus 138.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 PSR167 locus 138.8 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-6H PSR167 locus 1.5 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-6H PSR167 locus 61 () Automated name-based View Maps
Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-6 Xpsr167(Hpr)-6S locus 43.8 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_2 psr167 locus 93 (cM) Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H PSR167 locus -55.3 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H PSR167 locus 61.5 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-2 PSR167 locus 97 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_2 PSR167 locus 93.4 (cM) Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H PSR167 locus 8.4 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H PSR167 locus 67.07 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-6H PSR167 locus 0 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-6H PSR167 locus 0 () Automated name-based View Maps
TAM10 locus 61.92 Barley - Barley consensus - Barley-Consensus-6H TAM10 locus -41.6 () Automated name-based View Maps
Wheat AB - T. turgidum, durum x dicoccoides - Tturgidum-Du-6A Xtam10-6A locus -0.01 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H TAM10 locus 17.5 () Automated name-based View Maps
PSR627 locus 33.17 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6D psr627 locus 39.6 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H PSR627 locus 44.9 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H PSR627 locus 109.4 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H PSR627 locus -30.6 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr627 locus -58.1 () Automated name-based View Maps
BCD269 locus 121.46 Oat - Oat-2016-Consensus - Oat-2016-Consensus-4 BCD269 locus 37.9 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_11 bcd269 locus 31.5 (cM) Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-6H BCD269 locus 109.5 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_11 bcd269 locus 32 (cM) Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-6H BCD269 locus 97.44 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_33 BCD269 locus 14.2 (cM) Automated name-based View Maps
Barley - Barley, PxN - Hordeum-Heun-6H Xcnl.BCD269 locus 97 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H BCD269 locus 99.2 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H BCD269 locus 94.2 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H BCD269 locus 131.95 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H BCD269 locus 75.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_33 BCD269 locus 0 (cM) Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H BCD269 locus 4 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO33 bcd269 locus 11 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-33 BCD269 locus 11.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg04 BCD269 locus 37.9 () Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-6D BCD269 locus 306.2 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H BCD269 locus 99 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-6H BCD269 locus 108.7 () Automated name-based View Maps
BCD1 locus 168.52 Barley - Barley consensus 2003 - Barley-consensus-2003-6H BCD1 locus 85.9 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-6 Xbcd1 locus 73.3 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H BCD1 locus 171.42 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H BCD1 locus 23.2 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H BCD1 locus 128.5 () Automated name-based View Maps
ABC154 locus 141.9 Barley - Barley consensus 2 - Barley-Consensus2-6H ABC154 locus 97.6 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H ABC154 locus 94 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H ABC154B locus 81.2 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H ABC154 locus 31.5 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H ABC154 locus 113.4 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-6H ABC154 locus 122.26 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-6H ABC154 locus 96.4 () Automated name-based View Maps
PSR154 locus 149.2 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H PSR154 locus 113.1 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H PSR154 locus 161.81 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H PSR154 locus 99.2 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H PSR154 locus 115.79 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H PSR154 locus 33.5 () Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-6D PSR154 locus 376.2 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H PSR154 locus 113.4 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-6H PSR154 locus 28 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H PSR154 locus 107.13 () Automated name-based View Maps
Wheat U - Ae. umbellulata, A x C - Aeumbellulata-Zhang-4 Xpsr154-4U locus 54 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H PSR154 locus 90.9 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H PSR154 locus 108.8 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H PSR154 locus 115.79 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H PSR154 locus 107.88 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 PSR154 locus 115.79 () Automated name-based View Maps
BCD276 locus 160.52 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H BCD276 locus 124.2 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-6H BCD276 locus 116.12 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-5H BCD276 locus 28.5 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-6 Xbcd276 locus 73.3 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H BCD276 locus 115.01 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H BCD276 locus 114.7 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H BCD276 locus 107.56 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-5H BCD276 locus 45.33 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H BCD276 locus 79.8 () Automated name-based View Maps
BCD342 locus 3.57 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6D bcd342 locus 13.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A bcd342 locus 3.1 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xbcd342 locus 108.8 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-6H BCD342 locus 8.09 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H BCD342 locus 10.8 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H BCD342 locus 7.2 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H BCD342 locus 12.25 () Automated name-based View Maps
AWBMA36 locus 0 Barley - Barley, CxH - Hordeum-CxH-6H AWBMA36 locus 0 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H AWBMA36 locus 0 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H AWBMA36 locus 5.6 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H AWBMA36 locus 6.14 () Automated name-based View Maps
PSR119 locus 3.57 Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-7 Xpsr119(Fedr)-7S locus 7 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H PSR119 locus 10.31 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-7H PSR119 locus 10.01 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H PSR119 locus 10.8 () Automated name-based View Maps
PSR611 locus 64.14 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H PSR611 locus 68.2 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H PSR611 locus 19.4 () Automated name-based View Maps
AWBMA16 locus 151.3 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H AWBMA16 locus 115.6 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-3H AWBMA16 locus 87.28 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-7H AWBMA16 locus 131.39 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-7H AWBMA16 locus 94.9 () Automated name-based View Maps
AWBMA20 locus 179.08 Barley - Barley, GxH - Hordeum-GxH-6H AWBMA20 locus 188.25 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H AWBMA20 locus 137.8 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H AWBMA20 locus 127.4 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-6H AWBMA20 locus 154.47 () Automated name-based View Maps
AMYI locus 117.89 Barley - Barley, GxH - Hordeum-GxH-6H AMYI locus 101.9 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-6H AMYI locus 87.83 () Automated name-based View Maps
AMYI(A) locus 84.55 Barley - Barley, CxH - Hordeum-CxH-6H AMYI locus 87.83 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H AMYI locus 101.9 () Automated name-based View Maps
WG222(A) locus 103.85 Barley - Barley, GxH - Hordeum-GxH-6H WG222(A) locus 147.68 () Automated name-based View Maps
AMYI(B) locus 117.89 No other positions
BCD221(C) locus 149.2 No other positions
Centromere chromband 84.6 - 117.9 Barley - Barley consensus - Barley-Consensus-6H Centromere chromband -3.3 - 2.6 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-7H Centromere chromband 73.3 - 96.3 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-4H Centromere chromband 69.6 - 98.7 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H Centromere chromband -6.9 - 6.9 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H Centromere chromband 107.6 - 108.5 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H Centromere chromband -9.5 - 4.9 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-3H Centromere chromband 52.2 - 62 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-5H Centromere chromband 45.3 - 47.1 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Centromere chromband -18.7 - 18.7 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-3H Centromere chromband 14.1 - 53 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-1H Centromere chromband 41.9 - 65.4 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-3H Centromere chromband -56.7 - 56.7 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-5H Centromere chromband 5 - 50.1 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-6H Centromere chromband 31 - 79.6 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-2H Centromere chromband 94.6 - 115 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-7H Centromere chromband 106.8 - 114.3 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-2H Centromere chromband 80.2 - 83 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H Centromere chromband 81.4 - 90.2 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-5H Centromere chromband -0.5 - 1 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Centromere chromband -10.6 - 10.6 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-1H Centromere chromband 45.5 - 59 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-4H Centromere chromband 62 - 65.5 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-2H Centromere chromband 76.9 - 80.9 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H Centromere chromband -0.1 - 0.1 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-7H Centromere chromband 9.6 - 16.4 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-3H Centromere chromband -0.1 - 0.1 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-4H Centromere chromband -0.1 - 0.1 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-1H Centromere chromband 101 - 107.1 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Centromere chromband -16.9 - 16.9 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-3H Centromere chromband 46.1 - 107.6 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-4H Centromere chromband 74.6 - 87.6 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-7H Centromere chromband -1.9 - 1.8 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Centromere chromband -0.5 - 0.6 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-2H Centromere chromband -0.8 - 0.6 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.