*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, HxM/QTL
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-HxM-base-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, HxM/QTL [ View Map Set Info ]
Map Name: Hordeum-HxM-base-6H
Map Start: -0.10
Map Stop: 108.70
Features by Type:
16 locus
2 qtl
18 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 18 of 18.
Barley - Barley, HxM/QTL - Hordeum-HxM-base-6H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Centromere-6H locus 45.00 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6 Centromere-6H locus 67.00 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H Centromere-6H locus 71.40 - 75.10 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H Centromere-6H locus 83.00 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-6H Centromere-6H locus 99.20 - 105.10 () Automated name-based View Maps
ABG458 locus 39.20 Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H ABG458 locus 49.70 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-6H ABG458 locus 47.80 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 ABG458 locus 64.99 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H ABG458 locus 54.50 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-6H ABG458 locus 54.00 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-6H ABG458 locus 58.60 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H ABG458 locus 75.50 () Automated name-based View Maps
Barley - Barley, Cali-sib x BowmanBC, QTL - Hordeum-CxB-6H ABG458 locus 52.00 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-6H ABG458 locus 47.80 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSR - Hordeum-SxM-SSR-6H ABG458 locus 66.50 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H ABG458 locus 56.80 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H ABG458 locus -7.20 () Automated name-based View Maps
Barley - Barley, Rika/Kombar NTNB, 6H - Hordeum-RxK-NTNB-6H ABG458 locus 77.00 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H ABG458 locus 64.99 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H ABG458 locus 54.83 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H ABG458 locus 56.57 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H ABG458 locus 64.99 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-6H ABG458 locus 60.60 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H ABG458 locus 67.07 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H ABG458 locus 58.20 () Automated name-based View Maps
Barley - Barley, Igri x Franka, SSR - Hordeum-IxF-SSR-6H ABG458 locus 63.30 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H ABG458 locus 60.10 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H ABG458 locus 61.90 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H ABG458A locus 56.11 () Automated name-based View Maps
Amy1 locus 54.50 Barley - Barley, VGxA - Hordeum-Giese1-6H Amy1 locus 87.00 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H Amy1 locus 88.10 () Automated name-based View Maps
Barley - Barley genes 2 - Hordeum-Genes2-6H Amy1 locus -25.00 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-6H Amy1 locus 94.50 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-6H Amy1 locus 119.20 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-6H Amy1 locus 18.31 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H Amy1 locus 68.10 () Automated name-based View Maps
Barley - Barley, DxM, Dhn genes - Hordeum-DxM-Dnh-6H Amy1 locus 71.90 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H Amy1 locus 98.63 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 Amy1 locus 98.63 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-6H Amy1 locus 95.60 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H Amy1 locus 97.00 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H Amy1 locus 86.37 () Automated name-based View Maps
Barley - Barley, Dicktoo x Morex - Hordeum-DxM-6H Amy1 locus 71.90 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H Amy1 locus 19.60 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H Amy1 locus 98.63 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H Amy1 locus 95.90 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H Amy1 locus 84.90 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H Amy1 locus 91.26 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H Amy1 locus 97.90 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-6H Amy1 locus 96.60 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-6H Amy1 locus 80.20 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-6H Amy1 locus 80.20 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-6H Amy1 locus 79.40 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-6H Amy1 locus 111.00 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-6H Amy1 locus 98.20 () Automated name-based View Maps
ABG461B locus 86.70 Barley - Barley, HxM/QTL - Hordeum-HxM-base-7H ABG461B locus 125.00 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H ABG461B locus 117.00 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-6H ABG461B locus 150.50 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-6H ABG461B locus 121.70 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H ABG461B locus 110.10 () Automated name-based View Maps
ABC175 locus 49.30 Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H ABC175 locus 73.79 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-6H ABC175B locus 89.20 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H ABC175 locus 6.30 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-6H ABC175 locus 80.70 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H ABC175 locus 79.30 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-6H ABC175 locus 69.30 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-6H ABC175 locus 70.50 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H ABC175 locus 92.02 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H ABC175 locus 72.02 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H ABC175 locus 82.80 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H ABC175 locus 78.60 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-6H ABC175 locus 69.30 () Automated name-based View Maps
Barley - Barley, Igri x Franka, SSR - Hordeum-IxF-SSR-6H ABC175 locus 72.50 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-6H ABC175 locus 80.00 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H ABC175 locus 59.30 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSR - Hordeum-SxM-SSR-6H ABC175 locus 88.50 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H ABC175 locus 82.69 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H ABC175 locus 82.69 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6D abc175 locus 50.60 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 ABC175 locus 82.69 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H ABC175 locus 72.90 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H ABC175 locus 70.40 () Automated name-based View Maps
MWG934 locus 78.10 Barley - Barley, HxT basemap - Hordeum-HxT-base-6H MWG934 locus 119.50 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-6H MWG934 locus 87.60 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H MWG934 locus 98.55 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H MWG934 locus 105.10 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H MWG934 locus 107.34 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H MWG934 locus 105.10 () Automated name-based View Maps
Barley - Barley, Pilot OPA1, Consensus - Hordeum-PilotOPA1-6H MWG934 locus 104.00 () Automated name-based View Maps
Barley - Barley, IxF, Stein2006 - Hv-IxF-Stein-6H MWG934-6H locus 79.67 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H MWG934 locus 30.00 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-6H MWG934 locus 125.80 () Automated name-based View Maps
Barley - Barley, Igri x Franka, SSR - Hordeum-IxF-SSR-6H MWG934 locus 97.50 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H MWG934 locus 97.70 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-6H MWG934 locus 105.80 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 MWG934 locus 107.34 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-6H MWG934 locus 121.10 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H MWG934 locus 124.60 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6B mwg934 locus 55.70 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H MWG934 locus 107.34 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSR - Hordeum-SxM-SSR-6H MWG934 locus 112.70 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H MWG934 locus 116.70 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-6H MWG934 locus 136.70 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H MWG934 locus 97.31 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H MWG934 locus 103.90 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H MWG934 locus 123.58 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A mwg934 locus 53.20 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-6H MWG934 locus 87.60 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-6H MWG934 locus 95.00 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H MWG934 locus 97.31 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H MWG934 locus 101.10 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-6H MWG934 locus 160.38 () Automated name-based View Maps
ABC169B locus 42.80 Barley - Barley consensus 2 - Barley-Consensus2-6H ABC169B locus 58.40 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-6H ABC169B locus 64.80 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H ABC169B locus 64.30 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H ABC169B locus 59.61 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 ABC169B locus 68.47 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H ABC169B locus 68.47 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H ABC169B locus 63.80 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-6H ABC169B locus 51.80 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H ABC169B locus 59.12 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H ABC169B locus 68.47 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-6H ABC169B locus 51.80 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H ABC169B locus 62.40 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H ABC169B locus 62.60 () Automated name-based View Maps
MWG652A locus 4.50 Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-6H MWG652A locus 31.20 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H MWG652A locus 25.70 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H MWG652A locus 28.80 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H MWG652A locus 39.21 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 MWG652A locus 39.21 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H MWG652A locus 36.17 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H MWG652A locus 39.21 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-6H MWG652A locus 15.20 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H MWG652A locus 30.00 () Automated name-based View Maps
E33M54-493 locus 96.10 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H E33M54-493 locus 122.14 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-6H E33M54-493 locus 122.92 () Automated name-based View Maps
Barley - Barley, LxV - Hordeum-LxV-6H E33M54-493 locus 122.50 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H E33M54-493 locus 121.50 () Automated name-based View Maps
PSR156b locus 106.90 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-5H PSR156b locus 65.20 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H PSR156b locus 148.00 () Automated name-based View Maps
iAco1 locus 101.90 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H iAco1 locus 140.00 () Automated name-based View Maps
E33M61-399 locus 0.00 Barley - Barley, HxM/QTL - Hordeum-HxM-base-4H E33M61 locus 146.00 () Automated name-based View Maps
E33M51-85 locus 8.20 No other positions
E39M48-M002 locus 67.70 No other positions
E39M48-258 locus 74.90 No other positions
MWG789a locus 108.70 No other positions
QTw.nab-6H.1 qtl -0.10 - 8.30 No other positions
QTw.nab-6H.2 qtl 67.60 - 75.00 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.