*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, IxT/QTL
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-IxT/Q-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
chromband
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, IxT/QTL [ View Map Set Info ]
Map Name: Hordeum-IxT/Q-6H
Map Start: -52.80
Map Stop: 125.00
Features by Type:
1 chromband
12 locus
4 qtl
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr154 locus 72.80 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6 Xpsr154 locus 75.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD Xpsr154 locus 95.00 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr154 locus 61.40 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr154 locus 85.60 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xpsr154 locus 3.46 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr154 locus 16.50 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr154 locus 27.90 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-6D Xpsr154 locus 25.30 () Automated name-based View Maps
Xmwg652 locus -36.50 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xmwg652 locus -24.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xmwg652 locus 43.00 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6 Xmwg652 locus 48.00 () Automated name-based View Maps
Xmwg514 locus 120.90 Rye - Rye, P87 x P105, update - Secale-PxP-update-3R Xmwg514 locus 118.80 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xmwg514 locus 61.00 () Automated name-based View Maps
Xpsr167b locus -5.90 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6 Xpsr167b locus 0.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xpsr167b locus 10.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B Xpsr167b locus 124.00 () Automated name-based View Maps
Xpsr167a locus -52.80 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6 Xpsr167a locus 7.00 () Automated name-based View Maps
XzenC61 locus -15.90 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6 XzenC61 locus 60.00 () Automated name-based View Maps
Xpsb84 locus 7.90 Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6 Xpsb84 locus 66.00 () Automated name-based View Maps
Xmwg820 locus 23.60 No other positions
Xpsr966 locus -3.30 No other positions
Xpsr88b locus 12.50 No other positions
X_alpha-Amy1 locus 42.40 Wheat ABD - Wheat genes - Triticum-Genes-6B alpha-Amy1 locus 9.50 () Automated name-based View Maps
Xpsb56 locus 82.60 No other positions
eps6L.1 spring qtl -0.50 - 56.00 No other positions
eps6L.2 spring qtl 80.30 - 125.00 No other positions
eps6L.1 autumn qtl -0.50 - 56.00 No other positions
eps6L.2 autumn qtl 80.30 - 125.00 No other positions
Centromere chromband -6.90 - 6.90 Barley - Barley, CxH - Hordeum-CxH-7H Centromere chromband 106.80 - 114.30 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-3H Centromere chromband 14.10 - 53.00 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Centromere chromband -10.60 - 10.60 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-7H Centromere chromband 9.60 - 16.40 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-7H Centromere chromband -1.90 - 1.80 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-2H Centromere chromband 80.20 - 83.00 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-1H Centromere chromband 41.90 - 65.40 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-4H Centromere chromband 69.60 - 98.70 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Centromere chromband -16.90 - 16.90 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-6H Centromere chromband 81.40 - 90.20 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-1H Centromere chromband 101.00 - 107.10 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-4H Centromere chromband 74.60 - 87.60 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-6H Centromere chromband 31.00 - 79.60 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-2H Centromere chromband 94.60 - 115.00 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H Centromere chromband -3.30 - 2.60 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-5H Centromere chromband 45.30 - 47.10 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H Centromere chromband -9.50 - 4.90 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-5H Centromere chromband -0.50 - 1.00 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-3H Centromere chromband 46.10 - 107.60 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H Centromere chromband -0.10 - 0.10 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-5H Centromere chromband 5.00 - 50.10 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-2H Centromere chromband 76.90 - 80.90 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-4H Centromere chromband 62.00 - 65.50 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-3H Centromere chromband -56.70 - 56.70 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-3H Centromere chromband -0.10 - 0.10 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-4H Centromere chromband -0.10 - 0.10 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-7H Centromere chromband 73.30 - 96.30 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H Centromere chromband 107.60 - 108.50 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Centromere chromband -18.70 - 18.70 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-3H Centromere chromband 52.20 - 62.00 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-6H Centromere chromband 84.60 - 117.90 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-2H Centromere chromband -0.80 - 0.60 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-1H Centromere chromband 45.50 - 59.00 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-5H Centromere chromband -0.50 - 0.60 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.