*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, Lina x H.spont, SNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-LiHs-SNP-5H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, Lina x H.spont, SNP [ View Map Set Info ]
Map Name: Hordeum-LiHs-SNP-5H
Map Start: 0
Map Stop: 179.37
Features by Type:
65 locus
65 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 65.       Previous | of 3 | Next
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-5H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
GMS061 locus 137.11 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H GMS061 locus 145.19 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-5H GMS061 locus 122.09 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-5H GMS061 locus 174 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-5H GMS061 locus 126 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H GMS061 locus 124.1 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H GMS061 locus 145.19 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 GMS061 locus 145.19 () Automated name-based View Maps
Barley - Barley, Lx41 - Hordeum-Lx41-5H GMS061 locus 49.2 () Automated name-based View Maps
e35m42z locus 9.72 Barley - Barley, LxHs - Hordeum-LxHs-5H e35m42z locus 176 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H e35m42z locus 189.25 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 e35m42z locus 189.25 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H e35m42z locus 189.25 () Automated name-based View Maps
GMS001 locus 0.26 Barley - Barley, LxHs - Hordeum-LxHs-5H GMS001 locus 187 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-5H GMS001 locus 183.25 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H GMS001 locus 199.97 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 GMS001 locus 199.97 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H GMS001 locus 199.97 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H GMS001 locus 178.7 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-5H GMS001 locus 183.25 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-5H GMS001 locus 167.79 () Automated name-based View Maps
scsnp02737 locus 82.79 Barley - Barley, Nure x Tremois - Hv-Nure/Tremois-5H scsnp02737 locus 90.6 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H scsnp02737 locus 92.7 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp02737 locus 100.44 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp02737 locus 100.44 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp02737 locus 100.44 () Automated name-based View Maps
Bmac0560b locus 18.59 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H Bmac0560b locus 38.86 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H Bmac0560b locus 38.86 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 Bmac0560b locus 38.86 () Automated name-based View Maps
scsnp03171 locus 44.84 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp03171 locus 51.7 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-5H scsnp03171 locus 6.48 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp03171 locus 51.7 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp03171 locus 51.7 () Automated name-based View Maps
Bmac0518 locus 42.14 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H Bmac0518 locus 56 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-5H EBmac0518 locus 41 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H Bmac0518 locus 56 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 Bmac0518 locus 56 () Automated name-based View Maps
scsnp05926 locus 40.3 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp05926 locus 57.21 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp05926 locus 57.21 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp05926 locus 57.21 () Automated name-based View Maps
scsnp05704 locus 55.07 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp05704 locus 73.14 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp05704 locus 73.14 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp05704 locus 73.14 () Automated name-based View Maps
E46M42D3 locus 58.63 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H E46M42D3 locus 76.73 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 E46M42D3 locus 76.73 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H E46M42D3 locus 76.73 () Automated name-based View Maps
P95M95f locus 65.23 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H P95M95f locus 83.3 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H P95M95f locus 83.3 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 P95M95f locus 83.3 () Automated name-based View Maps
OPY11b locus 67.57 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H OPY11b locus 85.45 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H OPY11b locus 85.45 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 OPY11b locus 85.45 () Automated name-based View Maps
scsnp02738 locus 83.01 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp02738 locus 100.59 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp02738 locus 100.59 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp02738 locus 100.59 () Automated name-based View Maps
scsnp02739 locus 82.97 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp02739 locus 100.63 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp02739 locus 100.63 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp02739 locus 100.63 () Automated name-based View Maps
E33M52s locus 126.09 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 E33M52s locus 130.39 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H E33M52s locus 130.39 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H E33M52s locus 130.39 () Automated name-based View Maps
scsnp05508 locus 123.08 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp05508 locus 132.84 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp05508 locus 132.84 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp05508 locus 132.84 () Automated name-based View Maps
scsnp00892 locus 125.03 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp00892 locus 134.26 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp00892 locus 134.26 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp00892 locus 134.26 () Automated name-based View Maps
scsnp03900 locus 137.01 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp03900 locus 145.18 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp03900 locus 145.18 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp03900 locus 145.18 () Automated name-based View Maps
scsnp01178 locus 137.41 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp01178 locus 145.34 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp01178 locus 145.34 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp01178 locus 145.34 () Automated name-based View Maps
scsnp07194 locus 137.78 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp07194 locus 145.93 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp07194 locus 145.93 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp07194 locus 145.93 () Automated name-based View Maps
scsnp03113 locus 137.95 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp03113 locus 146 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp03113 locus 146 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp03113 locus 146 () Automated name-based View Maps
scsnp00314 locus 119.65 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp00314 locus 149.73 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp00314 locus 149.73 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp00314 locus 149.73 () Automated name-based View Maps
EbmatcA3 locus 53.88 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H EbmatcA3 locus 156.63 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 EbmatcA3 locus 156.63 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H EbmatcA3 locus 156.63 () Automated name-based View Maps
E41M32u locus 4.15 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 E41M32u locus 162.74 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H E41M32u locus 162.74 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H E41M32u locus 162.74 () Automated name-based View Maps
scsnp24102 locus 158.61 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp24102 locus 164.68 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp24102 locus 164.68 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp24102 locus 164.68 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.