*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, Lina x H.spont, SNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-LiHs-SNP-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, Lina x H.spont, SNP [ View Map Set Info ]
Map Name: Hordeum-LiHs-SNP-6H
Map Start: 0
Map Stop: 99.86
Features by Type:
51 locus
51 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 51.       Previous | of 3 | Next
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-6H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
HVM31 locus 18.24 Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-6H HVM31 locus 68 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H HVM31 locus 60.9 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H HVM31 locus 68.68 () Automated name-based View Maps
Barley - Barley, HN x H602, Sato2009 - Hv-HNxH602-6H HVM31 locus 94.7 () Automated name-based View Maps
Barley - Barley, Lx41 - Hordeum-Lx41-6H HVM31 locus 21.8 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H HVM31 locus 72.81 () Automated name-based View Maps
Barley - Barley, OWB, Stein2006 - Hv-DxR-Stein-6H HVM31-6H locus 34.91 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 HVM31 locus 72.81 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H HVM31 locus 64.13 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H HVM31 locus 60 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H HVM31 locus 72.81 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H HVM31 locus 60.9 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H HVM31 locus 64 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H HVM31 locus 68.7 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-6H HVM31 locus 103 () Automated name-based View Maps
Bmac0175b locus 18.58 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H Bmac0175b locus 72.75 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-6H Bmac0175b locus 103 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 Bmac0175b locus 72.75 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H Bmac0175b locus 72.75 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H Bmac0175b locus 61.79 () Automated name-based View Maps
HVM14 locus 18.57 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H HVM014 locus 65 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H HVM14 locus 61 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H HVM14 locus 17.5 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H HVM14 locus 62.28 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H HVM14 locus 71.7 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-6H HVM14 locus 103 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H HVM14 locus 61.93 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-6H HVM14 locus 60.75 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 HVM14 locus 71.7 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H HVM14 locus 62.28 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H HVM14 locus 71.7 () Automated name-based View Maps
HVM65 locus 18.24 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H HVM65 locus 72.73 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-6H HVM65 locus 60.71 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H HVM65 locus 72.73 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-6H HVM65 locus 103 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H HVM65 locus 68.2 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 HVM65 locus 72.73 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H HVM65 locus 62.11 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H HVM65 locus 60.7 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-6H HVM0065 locus 47.8 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H HVM65 locus 62.11 () Automated name-based View Maps
Bmgtttttt0001 locus 19.32 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H Bmgtttttt0001 locus 71.86 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 Bmgtttttt0001 locus 71.86 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-6H Bmgtttttt0001 locus 104 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H Bmgtttttt0001 locus 64.71 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H Bmgtttttt0001 locus 71.86 () Automated name-based View Maps
Bmac0251 locus 28.95 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H Bmac0251 locus 61.77 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H Bmac0251 locus 69.25 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 Bmac0251 locus 61.77 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-6H Bmac0251 locus 113 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H Bmac0251 locus 61.77 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-6H Bmac0251 locus 83.9 () Automated name-based View Maps
Bmag0571a locus 47.21 Barley - Barley, LxHs - Hordeum-LxHs-6H Bmag0571a locus 130 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H Bmag0571a locus 44.66 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H Bmag0571a locus 105.45 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 Bmag0571a locus 44.66 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H Bmag0571a locus 44.66 () Automated name-based View Maps
scsnp25019 locus 90.17 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp25019 locus 7.03 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp25019 locus 7.03 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp25019 locus 7.03 () Automated name-based View Maps
84c21j33 locus 90.34 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H 84c21j33 locus 7.17 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H BAC84c21_s33 locus 0 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 84c21j33 locus 7.17 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H 84c21j33 locus 7.17 () Automated name-based View Maps
HVM11s locus 38.44 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H HVM11s locus 53.93 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 HVM11s locus 53.93 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H HVM11s locus 53.93 () Automated name-based View Maps
scsnp14687 locus 25.97 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp14687 locus 64.69 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp14687 locus 64.69 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp14687 locus 64.69 () Automated name-based View Maps
BAREP16f locus 4.62 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H BAREP16f locus 66.94 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H BAREP16f locus 66.94 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 BAREP16f locus 66.94 () Automated name-based View Maps
scsnp18140 locus 20.19 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp18140 locus 70.41 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp18140 locus 70.41 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp18140 locus 70.41 () Automated name-based View Maps
Bmag0001 locus 19.34 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 Bmag0001 locus 71.86 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H Bmag0001 locus 71.86 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H Bmag0001 locus 71.86 () Automated name-based View Maps
Bmag0004a locus 19.32 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H Bmag0004a locus 71.91 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 Bmag0004a locus 71.91 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H Bmag0004a locus 71.91 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H Bmag0004a locus 64.71 () Automated name-based View Maps
scsnp04676 locus 17.6 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp04676 locus 73.56 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp04676 locus 73.56 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp04676 locus 73.56 () Automated name-based View Maps
scsnp04320 locus 17.55 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp04320 locus 73.58 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp04320 locus 73.58 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp04320 locus 73.58 () Automated name-based View Maps
scsnp06878 locus 17.54 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp06878 locus 73.63 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp06878 locus 73.63 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp06878 locus 73.63 () Automated name-based View Maps
scsnp04725 locus 19.81 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp04725 locus 74.01 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp04725 locus 74.01 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp04725 locus 74.01 () Automated name-based View Maps
E46M42g locus 16.64 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H E46M42g locus 76.01 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H E46M42g locus 76.01 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 E46M42g locus 76.01 () Automated name-based View Maps
E45M48D4 locus 23.25 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 E45M48D4 locus 77.15 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H E45M48D4 locus 77.15 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H E45M48D4 locus 77.15 () Automated name-based View Maps
scsnp00917 locus 29.93 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp00917 locus 84.17 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp00917 locus 84.17 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp00917 locus 84.17 () Automated name-based View Maps
E45M48d locus 35.06 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H E45M48d locus 89.21 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 E45M48d locus 89.21 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H E45M48d locus 89.21 () Automated name-based View Maps
E41M32q locus 39.5 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H E41M32q locus 93.42 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H E41M32q locus 93.42 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 E41M32q locus 93.42 () Automated name-based View Maps
E43M38d->500 locus 21.29 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.