*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, Lx41
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Lx41-3H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, Lx41 [ View Map Set Info ]
Map Name: Hordeum-Lx41-3H
Map Start: 0.00
Map Stop: 139.70
Features by Type:
7 locus
7 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 7 of 7.
Barley - Barley, Lx41 - Hordeum-Lx41-3H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
HvLTPPB locus 0.00 Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-3H HvLTPPB locus 20.49 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-3H HvLTPPB locus 27.97 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H HvLTPPB locus 19.38 () Automated name-based View Maps
Barley - Barley, AxHs/QTL - Hordeum-Pillen-3H HvLTPPB locus 25.00 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 HvLTPPB locus 19.38 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H HvLTPPB locus 31.80 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-3H HvLTPPB locus 25.00 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H HvLTPPB locus 12.87 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H HvLTPPB locus 19.38 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-3H HvLTPPB locus 20.49 () Automated name-based View Maps
Barley - Barley, HN x H602, Sato2009 - Hv-HNxH602-3H HvLTPPB locus 41.50 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-3H HvLTPPB locus 18.30 () Automated name-based View Maps
Bmag0131 locus 43.50 Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H Bmag0131 locus 41.89 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H Bmag0131 locus 61.70 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H Bmag0131 locus 49.57 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-3H Bmag0131 locus 51.06 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 Bmag0131 locus 49.57 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H Bmag0131 locus 49.57 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-3H Bmag0131 locus 43.40 () Automated name-based View Maps
Barley - Barley, AxHs/QTL - Hordeum-Pillen-3H Bmag0131 locus 56.00 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-3H Bmag0131 locus 55.00 () Automated name-based View Maps
HVM33 locus 139.70 Barley - Barley, LxHs - Hordeum-LxHs-3H HVM33 locus 69.00 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-3H HVM0033 locus 51.60 () Automated name-based View Maps
Barley - Barley, AxHs/QTL - Hordeum-Pillen-3H HVM33 locus 70.00 () Automated name-based View Maps
Barley - Barley, Cali-sib x BowmanBC, QTL - Hordeum-CxB-3H HVM33 locus 86.40 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H HVM33 locus 64.66 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H HVM33 locus 80.30 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-3H HVM33 locus 56.70 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-3H HVM33 locus 65.50 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-3H HVM33 locus 65.97 () Automated name-based View Maps
Barley - Barley, HN x H602, Sato2009 - Hv-HNxH602-3H HVM33 locus 135.80 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 HVM33 locus 64.66 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H HVM33 locus 77.00 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H HVM33 locus 54.15 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H HVM33 locus 64.66 () Automated name-based View Maps
Barley - Barley, Nure x Tremois - Hv-Nure/Tremois-3H HVM33 locus 65.40 () Automated name-based View Maps
HVM60 locus 101.20 Barley - Barley, OWB - Hordeum-OWB-3H HVM60 locus 106.20 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-3H HVM60 locus 73.19 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H HVM60 locus 87.90 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H HVM60 locus 88.20 () Automated name-based View Maps
Barley - Barley, HN x H602, Sato2009 - Hv-HNxH602-3H HVM60 locus 159.00 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-3H HVM60 locus 76.70 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-3H HVM60 locus 75.40 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-3H HVM0060 locus 58.40 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 HVM60 locus 74.32 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H HVM60 locus 74.32 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H HVM60 locus 74.32 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-3H HVM60 locus 92.80 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H HVM60 locus 58.55 () Automated name-based View Maps
Barley - Barley, Cali-sib x BowmanBC, QTL - Hordeum-CxB-3H HVM60 locus 104.90 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-3H HVM60 locus 109.44 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-3H HVM60 locus 22.40 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-3H HVM60 locus 73.00 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-3H HVM60 locus 73.19 () Automated name-based View Maps
GMS116 locus 80.60 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H GMS116 locus 70.81 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-3H GMS0116 locus 54.30 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H GMS116 locus 62.88 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 GMS116 locus 70.81 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H GMS116 locus 70.81 () Automated name-based View Maps
Barley - Barley, AxHs/QTL - Hordeum-Pillen-3H GMS116 locus 79.00 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-3H GMS116 locus 78.00 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H GMS116 locus 82.70 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-3H GMS116 locus 90.50 () Automated name-based View Maps
HvES1A locus 61.70 Barley - Barley, AxHs/QTL - Hordeum-Pillen-3H HvES1A locus 66.00 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-3H HvES0001A locus 46.10 () Automated name-based View Maps
Bmag0138 locus 52.70 Barley - Barley, Cali-sib x BowmanBC, QTL - Hordeum-CxB-3H Bmag0138 locus 81.20 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H Bmag0138a locus 45.24 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.