*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, Nure x Tremois
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hv-Nure/Tremois-7H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, Nure x Tremois [ View Map Set Info ]
Map Name: Hv-Nure/Tremois-7H
Map Start: 0
Map Stop: 141
Features by Type:
68 locus
68 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 68.       of 3 | Next
Barley - Barley, Nure x Tremois - Hv-Nure/Tremois-7H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
HvPLASC1B locus 0 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H HVPLASC1B locus 6.8 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-7H HVPLASC1B locus 8 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H HVPLASC1B locus 0 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-7H HVPLASC1B locus 2.65 () Automated name-based View Maps
bPb-7004 locus 0 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-7004 locus 6.8 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-7004 locus 3 () Automated name-based View Maps
bPb-2718 locus 0 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-2718 locus 3 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-2718 locus 6.8 () Automated name-based View Maps
bPb-6170 locus 0.1 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-6170 locus 6.8 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-6170 locus 3 () Automated name-based View Maps
HvACX1 locus 0.9 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H HvACX1 locus 7.1 () Automated name-based View Maps
bPb-4064 locus 3 Barley - Barley, B73xCPI - Barley, B73xCPI-7H bPb-4064 locus 5.5 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-4064 locus 8.6 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-4064 locus 5 () Automated name-based View Maps
bPb-7038 locus 3 Barley - Barley, B73xCPI - Barley, B73xCPI-7H bPb-7038 locus 5.5 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-7038 locus 3.5 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-7038 locus 8 () Automated name-based View Maps
bPb-3127 locus 3.3 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-3127 locus 3 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-3127 locus 8.1 () Automated name-based View Maps
bPb-0043 locus 3.3 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-0043 locus 8.3 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-0043 locus 3 () Automated name-based View Maps
TC-MYB2 locus 3.4 No other positions
bPb-8558 locus 7.5 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-8558 locus 11.4 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-8558 locus 7.5 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-7H bPb-8558 locus 8.2 () Automated name-based View Maps
bPb-2678 locus 8.3 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-2678 locus 5 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-2678 locus 11.9 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-7H bPb-2678 locus 8.2 () Automated name-based View Maps
bPb-5816 locus 11.5 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-5816 locus 12.4 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H bPb-5816 locus 9.8 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-5816 locus 14.2 () Automated name-based View Maps
bPb-0578 locus 12.8 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-0578 locus 14 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-0578 locus 16.7 () Automated name-based View Maps
Bmag0007 locus 14.3 Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-7H Bmag0007 locus 15.22 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-7 Bmag0007 locus 24.33 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-7H Bmag0007 locus 24.33 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H Bmag0007 locus 18.6 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-7H Bmag0007 locus 25.58 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-7H Bmag0007 locus 26.97 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-7H Bmag0007 locus 17.3 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-7H Bmag0007 locus 24.33 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-7H Bmag0007 locus 17.9 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-7H Bmag0007 locus 14.4 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-7H Bmag0007 locus 20.62 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-7H Bmag0007 locus 14.2 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-7H Bmag0007 locus 27 () Automated name-based View Maps
bPb-8043 locus 15.4 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-8043 locus 20 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-8043 locus 17 () Automated name-based View Maps
bPb-5902 locus 15.8 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-5902 locus 18 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-5902 locus 20.7 () Automated name-based View Maps
bPb-7863 locus 15.9 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-7863 locus 20 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-7863 locus 17.5 () Automated name-based View Maps
bPb-4634 locus 16.1 Barley - Barley, B73xCPI - Barley, B73xCPI-7H bPb-4634 locus 19.2 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-4634 locus 20 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-4634 locus 16.8 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H bPb-4634 locus 11.97 () Automated name-based View Maps
bPb-1994 locus 16.1 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-1994 locus 20 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-1994 locus 17.1 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-7H bPb-1994 locus 19.2 () Automated name-based View Maps
HVM4 locus 18 Barley - Barley, HN x H602, Sato2009 - Hv-HNxH602-7H HVM4 locus 45.7 () Automated name-based View Maps
Barley - Barley, AxHs/QTL - Hordeum-Pillen-7H HVM4 locus 27 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-7H HVM4 locus 27 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-7H HVM0004 locus 19.2 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-7H HVM4 locus 27.28 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-7H HVM4 locus 27.5 () Automated name-based View Maps
E42M32-231 locus 18.5 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H E42M32-231 locus 23.5 () Automated name-based View Maps
Barley - Barley, LxV - Hordeum-LxV-7H E42M32-231 locus 26.5 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H E42M32-231 locus 25.31 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-7H E42M32-231 locus 28.56 () Automated name-based View Maps
bPb-9237 locus 19.1 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-9237 locus 21.1 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-9237 locus 23.2 () Automated name-based View Maps
Fry1 locus 32.1 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H Fry1 locus 37.5 () Automated name-based View Maps
bPb-1806 locus 32.2 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H bPb-1806 locus 35.2 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H bPb-1806 locus 38.9 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.