*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA123-2008, Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPA123-2008-2H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA123-2008, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPA123-2008-2H
Map Start: 0
Map Stop: 160.29
Features by Type:
485 locus
485 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 485.       Previous | of 20 | Next
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-2H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0317 locus 59.9 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0317 locus 56.5 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0317 locus 59.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0317 locus 68.56 () Automated name-based View Maps
POPA1_0325 locus 54.95 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0325 locus 56.64 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0325 locus 53.3 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0325 locus 54.95 () Automated name-based View Maps
POPA1_0326 locus 6.45 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0326 locus 4.72 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0326 locus 6.45 () Automated name-based View Maps
POPA1_0329 locus 155.3 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0329 locus 155.3 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0329 locus 182.41 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0329 locus 168.26 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0329 locus 144.3 () Automated name-based View Maps
POPA1_0342 locus 44.13 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0342 locus 41.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0342 locus 44.82 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0342 locus 55.21 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0342 locus 44.13 () Automated name-based View Maps
POPA1_0358 locus 59.9 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0358 locus 59.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0358 locus 67.08 () Automated name-based View Maps
POPA1_0376 locus 131.77 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0376 locus 124.3 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0376 locus 131.77 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0376 locus 149.27 () Automated name-based View Maps
POPA1_0383 locus 130.01 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0383 locus 147.37 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0383 locus 155.77 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0383 locus 130.01 () Automated name-based View Maps
POPA1_0398 locus 100.37 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0398 locus 118.99 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0398 locus 100.37 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0398 locus 113.53 () Automated name-based View Maps
POPA1_0399 locus 39.1 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0399 locus 39.7 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0399 locus 39.1 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0399 locus 40.03 () Automated name-based View Maps
POPA1_0404 locus 117.2 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0404 locus 117.2 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0404 locus 133.71 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0404 locus 109.8 () Automated name-based View Maps
POPA1_0407 locus 71.12 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0407 locus 82.44 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0407 locus 71.12 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0407 locus 85.92 () Automated name-based View Maps
POPA1_0422 locus 52.47 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0422 locus 66.18 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0422 locus 52.47 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0422 locus 56.64 () Automated name-based View Maps
POPA1_0429 locus 115.08 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0429 locus 106.4 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0429 locus 115.08 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0429 locus 135.83 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0429 locus 130.38 () Automated name-based View Maps
POPA1_0436 locus 62.82 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0436 locus 77.1 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0436 locus 62.82 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0436 locus 72.99 () Automated name-based View Maps
POPA1_0446 locus 125.46 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0446 locus 125.46 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0446 locus 140.69 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0446 locus 149.15 () Automated name-based View Maps
POPA1_0475 locus 88.74 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0475 locus 101.3 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0475 locus 81.5 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0475 locus 88.74 () Automated name-based View Maps
POPA1_0498 locus 49.07 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0498 locus 62.9 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0498 locus 49.07 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0498 locus 50.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0498 locus 53.09 () Automated name-based View Maps
POPA1_0525 locus 38.03 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0525 locus 38.8 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0525 locus 38.86 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0525 locus 38.03 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0525 locus 55.21 () Automated name-based View Maps
Barley - Barley, SFNB QTL 2017 - Barley, SFNB QTL 2017 2H POPA1_0525 locus 38.03 () Automated name-based View Maps
POPA1_0538 locus 116.49 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0538 locus 133.04 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0538 locus 116.49 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0538 locus 109.4 () Automated name-based View Maps
POPA1_0551 locus 139.65 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0551 locus 156.77 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0551 locus 139.65 () Automated name-based View Maps
POPA1_0566 locus 140.27 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0566 locus 140.27 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0566 locus 133.3 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0566 locus 157.26 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-2H POPA1_0566 locus 172.56 () Automated name-based View Maps
POPA1_0602 locus 58.24 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0602 locus 63.55 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0602 locus 55.5 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0602 locus 58.24 () Automated name-based View Maps
POPA1_0619 locus 82.75 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0619 locus 82.75 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0619 locus 95.58 () Automated name-based View Maps
POPA1_0624 locus 59.21 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-2H POPA1_0624 locus 67.08 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 2H POPA1_0624 locus 55.9 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-2H POPA1_0624 locus 59.21 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.