*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA123-2008, Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPA123-2008-4H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA123-2008, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPA123-2008-4H
Map Start: 0
Map Stop: 123.29
Features by Type:
338 locus
338 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 338.       Previous | of 14 | Next
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0490 locus 12.02 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0490 locus 12.34 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0490 locus 16.97 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0490 locus 12.02 () Automated name-based View Maps
POPA1_0510 locus 102.37 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0510 locus 112.88 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0510 locus 101.4 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0510 locus 102.37 () Automated name-based View Maps
POPA1_0523 locus 78.77 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0523 locus 78.77 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0523 locus 88.3 () Automated name-based View Maps
POPA1_0527 locus 55.63 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0527 locus 65.28 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0527 locus 55.63 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0527 locus 54.5 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0527 locus 54.44 () Automated name-based View Maps
POPA1_0568 locus 55.63 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0568 locus 54.44 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0568 locus 62.15 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0568 locus 55.63 () Automated name-based View Maps
POPA1_0574 locus 20.12 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0574 locus 20.12 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0574 locus 25.94 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0574 locus 21.53 () Automated name-based View Maps
POPA1_0577 locus 48.5 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0577 locus 54.73 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0577 locus 50.8 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0577 locus 48.5 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0577 locus 52.27 () Automated name-based View Maps
POPA1_0588 locus 89.39 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0588 locus 89.39 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0588 locus 85.6 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0588 locus 97.52 () Automated name-based View Maps
POPA1_0606 locus 67.46 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0606 locus 65.48 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0606 locus 60.8 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0606 locus 78.08 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0606 locus 67.46 () Automated name-based View Maps
POPA1_0610 locus 119.09 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0610 locus 119.09 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0610 locus 115.04 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0610 locus 139.97 () Automated name-based View Maps
POPA1_0611 locus 114.66 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0611 locus 114.66 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0611 locus 135.58 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0611 locus 111.3 () Automated name-based View Maps
POPA1_0614 locus 100.74 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0614 locus 100.74 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0614 locus 100.6 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0614 locus 111.81 () Automated name-based View Maps
POPA1_0627 locus 68.21 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0627 locus 63.7 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0627 locus 68.21 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0627 locus 79.47 () Automated name-based View Maps
POPA1_0639 locus 65.05 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0639 locus 59.6 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0639 locus 76.09 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0639 locus 65.05 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0639 locus 63.31 () Automated name-based View Maps
POPA1_0667 locus 48.5 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0667 locus 52.27 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0667 locus 51 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0667 locus 54.73 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0667 locus 48.5 () Automated name-based View Maps
POPA1_0668 locus 44.94 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0668 locus 46.73 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0668 locus 44.94 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0668 locus 50.22 () Automated name-based View Maps
POPA1_0697 locus 114.66 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0697 locus 111.78 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0697 locus 114.66 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0697 locus 135.58 () Automated name-based View Maps
POPA1_0712 locus 111.66 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0712 locus 108.52 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0712 locus 111.66 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0712 locus 132.78 () Automated name-based View Maps
POPA1_0723 locus 84.3 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0723 locus 93.08 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0723 locus 80.9 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0723 locus 84.3 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0723 locus 83.15 () Automated name-based View Maps
POPA1_0724 locus 82.42 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0724 locus 78.8 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0724 locus 91.42 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0724 locus 82.42 () Automated name-based View Maps
POPA1_0738 locus 19.52 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0738 locus 19.52 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0738 locus 19.45 () Automated name-based View Maps
POPA1_0756 locus 48.5 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0756 locus 52.27 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0756 locus 50.8 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0756 locus 54.73 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0756 locus 48.5 () Automated name-based View Maps
POPA1_0785 locus 93.87 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0785 locus 93.08 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0785 locus 93.87 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0785 locus 102.93 () Automated name-based View Maps
POPA1_0793 locus 44.94 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0793 locus 44.94 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0793 locus 50.22 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0793 locus 46.73 () Automated name-based View Maps
POPA1_0807 locus 55.63 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0807 locus 55.63 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H POPA1_0807 locus 63.79 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.