*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA123-2008, Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPA123-2008-5H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA123-2008, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPA123-2008-5H
Map Start: 0
Map Stop: 196.85
Features by Type:
535 locus
535 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 535.       of 22 | Next
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0024 locus 107.59 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0024 locus 96.12 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0024 locus 126.01 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0024 locus 107.59 () Automated name-based View Maps
POPA1_0045 locus 131.56 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0045 locus 131.56 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0045 locus 123.78 () Automated name-based View Maps
POPA1_0058 locus 51.3 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0058 locus 44.2 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0058 locus 42.41 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0058 locus 51.3 () Automated name-based View Maps
POPA1_0080 locus 151.36 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0080 locus 143.29 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0080 locus 179.39 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0080 locus 151.36 () Automated name-based View Maps
POPA1_0094 locus 122.38 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0094 locus 122.38 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0094 locus 114.14 () Automated name-based View Maps
POPA1_0095 locus 137.16 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0095 locus 126.8 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0095 locus 132.32 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0095 locus 137.16 () Automated name-based View Maps
POPA1_0104 locus 146 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0104 locus 178.3 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0104 locus 141.88 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0104 locus 146 () Automated name-based View Maps
POPA1_0116 locus 50.27 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0116 locus 41.45 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0116 locus 50.27 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0116 locus 44.2 () Automated name-based View Maps
POPA1_0127 locus 80.61 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0127 locus 80.61 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0127 locus 68.21 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0127 locus 91.64 () Automated name-based View Maps
POPA1_0146 locus 132.27 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0146 locus 122.4 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0146 locus 132.27 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0146 locus 124.43 () Automated name-based View Maps
POPA1_0157 locus 51 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0157 locus 58.35 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0157 locus 42.41 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0157 locus 51 () Automated name-based View Maps
POPA1_0161 locus 159.79 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0161 locus 155.45 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0161 locus 144.7 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0161 locus 159.79 () Automated name-based View Maps
POPA1_0167 locus 85.21 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0167 locus 71.93 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0167 locus 85.21 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0167 locus 94.97 () Automated name-based View Maps
POPA1_0177 locus 51 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0177 locus 42.41 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0177 locus 51 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0177 locus 58.35 () Automated name-based View Maps
POPA1_0183 locus 80.02 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0183 locus 67.66 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0183 locus 91.64 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0183 locus 80.02 () Automated name-based View Maps
POPA1_0217 locus 153.51 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0217 locus 149.94 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0217 locus 139.9 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0217 locus 153.51 () Automated name-based View Maps
POPA1_0236 locus 181.43 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0236 locus 161.7 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0236 locus 181.43 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0236 locus 172.83 () Automated name-based View Maps
POPA1_0240 locus 51 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0240 locus 51 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0240 locus 42.41 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0240 locus 58.35 () Automated name-based View Maps
POPA1_0252 locus 51 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0252 locus 51 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0252 locus 42.41 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0252 locus 58.35 () Automated name-based View Maps
POPA1_0254 locus 179.06 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0254 locus 169.72 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0254 locus 223.64 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0254 locus 179.06 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0254 locus 159.5 () Automated name-based View Maps
POPA1_0260 locus 46.23 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0260 locus 46.23 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0260 locus 41.3 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0260 locus 38.78 () Automated name-based View Maps
POPA1_0292 locus 144.63 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0292 locus 144.63 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0292 locus 139.63 () Automated name-based View Maps
POPA1_0310 locus 187.96 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0310 locus 183.14 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0310 locus 232.46 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0310 locus 187.96 () Automated name-based View Maps
POPA1_0318 locus 51 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0318 locus 58.35 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0318 locus 51 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0318 locus 42.41 () Automated name-based View Maps
POPA1_0336 locus 161.58 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0336 locus 149.1 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0336 locus 161.58 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H POPA1_0336 locus 157.61 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0336 locus 196.15 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.