*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA123-2008, Consensus
(Reference Set)
Barley-Barley, 2012 9KSNP
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPA123-2008-7H Barley, 2012 9KSNP 7H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA123-2008, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPA123-2008-7H
Map Start: 0.00
Map Stop: 166.56
Features by Type:
417 locus
417 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 417.       of 17 | Next
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-7H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0025 locus 21.13 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0025 locus 14.39 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0025 locus 21.13 () Automated name-based View Maps
POPA1_0050 locus 63.66 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0050 locus 63.05 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0050 locus 57.57 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0050 locus 60.80 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0050 locus 63.66 () Automated name-based View Maps
POPA1_0055 locus 79.60 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0055 locus 80.66 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0055 locus 70.70 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0055 locus 81.78 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0055 locus 79.60 () Automated name-based View Maps
POPA1_0056 locus 40.18 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0056 locus 40.18 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0056 locus 33.49 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0056 locus 37.60 () Automated name-based View Maps
POPA1_0069 locus 83.44 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0069 locus 83.44 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0069 locus 83.42 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0069 locus 74.40 () Automated name-based View Maps
POPA1_0073 locus 78.22 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0073 locus 80.66 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0073 locus 78.22 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0073 locus 71.00 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0073 locus 81.78 () Automated name-based View Maps
POPA1_0078 locus 136.62 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0078 locus 137.31 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0078 locus 136.62 () Automated name-based View Maps
POPA1_0083 locus 77.45 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0083 locus 79.58 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0083 locus 79.08 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0083 locus 77.45 () Automated name-based View Maps
POPA1_0115 locus 78.22 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0115 locus 78.22 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0115 locus 71.00 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0115 locus 81.78 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0115 locus 80.66 () Automated name-based View Maps
POPA1_0121 locus 1.89 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0121 locus 2.17 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0121 locus 1.89 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0121 locus 2.13 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0121 locus 1.60 () Automated name-based View Maps
POPA1_0130 locus 147.48 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0130 locus 149.31 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0130 locus 168.26 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0130 locus 147.48 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0130 locus 131.40 () Automated name-based View Maps
POPA1_0143 locus 87.97 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0143 locus 90.64 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0143 locus 87.97 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0143 locus 91.12 () Automated name-based View Maps
POPA1_0153 locus 73.75 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0153 locus 79.08 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0153 locus 65.40 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0153 locus 73.75 () Automated name-based View Maps
POPA1_0169 locus 104.78 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0169 locus 106.80 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0169 locus 93.80 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0169 locus 104.78 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0169 locus 117.90 () Automated name-based View Maps
POPA1_0174 locus 166.56 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0174 locus 162.03 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0174 locus 166.56 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0174 locus 140.90 () Automated name-based View Maps
POPA1_0182 locus 128.36 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0182 locus 128.36 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0182 locus 129.32 () Automated name-based View Maps
POPA1_0232 locus 34.82 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0232 locus 31.84 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0232 locus 34.82 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0232 locus 29.05 () Automated name-based View Maps
POPA1_0256 locus 77.85 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0256 locus 77.85 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0256 locus 79.08 () Automated name-based View Maps
POPA1_0299 locus 73.75 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0299 locus 73.75 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0299 locus 72.18 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0299 locus 67.80 () Automated name-based View Maps
POPA1_0303 locus 87.97 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0303 locus 77.30 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0303 locus 87.97 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0303 locus 89.78 () Automated name-based View Maps
POPA1_0327 locus 42.60 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0327 locus 40.70 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0327 locus 42.60 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0327 locus 36.26 () Automated name-based View Maps
POPA1_0346 locus 61.32 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0346 locus 55.64 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0346 locus 61.32 () Automated name-based View Maps
POPA1_0370 locus 79.60 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0370 locus 70.40 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0370 locus 81.78 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-7H POPA1_0370 locus 80.66 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0370 locus 79.60 () Automated name-based View Maps
POPA1_0394 locus 77.85 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0394 locus 81.78 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0394 locus 70.70 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0394 locus 77.85 () Automated name-based View Maps
POPA1_0431 locus 71.10 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-7H POPA1_0431 locus 67.02 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-7H POPA1_0431 locus 71.10 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 7H POPA1_0431 locus 65.40 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.