*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA 2009, Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPA-2009-1H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA 2009, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPA-2009-1H
Map Start: 0.00
Map Stop: 210.40
Features by Type:
358 locus
358 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 358.       of 15 | Next
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
BCD98 locus 37.64 Wheat ABD - Wheat sprouting markers - Ta-Anderson-1A BCD98 locus 49.40 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A bcd98 locus 24.10 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-1H BCD98 locus 30.20 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-8 BCD98 locus 111.70 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H BCD98 locus 49.03 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-1H BCD98 locus 31.50 () Automated name-based View Maps
Wheat ABD - Wheat.Rye recombinant - 1D.1R recombinants BCD98 locus 55.50 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H BCD98 locus 50.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg12 BCD98 locus 63.50 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 7B bcd98 locus 27.00 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-1H BCD98 locus 37.00 () Automated name-based View Maps
Wheat U - Ae. umbellulata, A x C - Aeumbellulata-Zhang-1 Xbcd98-1U locus 58.00 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-1H BCD98 locus 34.57 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H BCD98 locus -9.60 () Automated name-based View Maps
MWG912 locus 199.04 Barley - Barley, HxT basemap - Hordeum-HxT-base-1H MWG912 locus 159.90 () Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-1H MWG912 locus -56.80 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-1H MWG912 locus 136.75 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-1H MWG912 locus 146.30 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-1H MWG912 locus 147.90 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-1H MWG912 locus 133.37 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A mwg912 locus 83.70 () Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-1H MWG912 locus 158.10 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H MWG912 locus 145.72 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-1H MWG912 locus 133.80 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-1H MWG912 locus 138.40 () Automated name-based View Maps
Barley - Barley, HxM/QTL - Hordeum-HxM-base-1H MWG912 locus 125.20 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-1H MWG912 locus 157.40 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-1H MWG912 locus 107.30 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-1H MWG912 locus 169.30 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-1H MWG912 locus 132.60 () Automated name-based View Maps
Barley - Barley, IxF, Stein2006 - Hv-IxF-Stein-1H MWG912-1H locus 129.21 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-1H MWG912 locus 141.40 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-1H MWG912 locus 146.30 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B mwg912 locus 96.30 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-1H MWG912 locus 144.20 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H MWG912 locus 153.32 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 MWG912 locus 145.72 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-1H MWG912 locus 129.70 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H MWG912 locus 154.00 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H MWG912 locus 145.72 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-1H MWG912 locus 136.20 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-1H MWG912 locus 148.00 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H MWG912 locus 153.01 () Automated name-based View Maps
POPA1_0002 locus 66.70 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0002 locus 76.42 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0002 locus 61.50 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0002 locus 64.44 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0002 locus 66.70 () Automated name-based View Maps
POPA1_0006 locus 73.94 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0006 locus 71.00 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0006 locus 73.94 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0006 locus 76.92 () Automated name-based View Maps
POPA1_0030 locus 18.05 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0030 locus 17.40 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0030 locus 18.05 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0030 locus 21.30 () Automated name-based View Maps
POPA1_0041 locus 135.56 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0041 locus 153.01 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0041 locus 135.56 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0041 locus 138.86 () Automated name-based View Maps
POPA1_0043 locus 65.96 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0043 locus 60.80 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0043 locus 65.96 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0043 locus 63.74 () Automated name-based View Maps
POPA1_0075 locus 55.49 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0075 locus 48.40 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0075 locus 55.49 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0075 locus 45.20 () Automated name-based View Maps
POPA1_0111 locus 101.45 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0111 locus 112.05 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0111 locus 105.77 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0111 locus 101.45 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0111 locus 97.90 () Automated name-based View Maps
POPA1_0176 locus 61.53 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0176 locus 61.53 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0176 locus 58.59 () Automated name-based View Maps
POPA1_0186 locus 23.86 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0186 locus 22.04 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0186 locus 33.23 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0186 locus 23.86 () Automated name-based View Maps
POPA1_0238 locus 36.95 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0238 locus 51.04 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0238 locus 30.15 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0238 locus 36.95 () Automated name-based View Maps
POPA1_0259 locus 47.47 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0259 locus 46.30 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0259 locus 47.47 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0259 locus 40.40 () Automated name-based View Maps
POPA1_0275 locus 42.52 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0275 locus 42.52 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0275 locus 35.77 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0275 locus 42.80 () Automated name-based View Maps
POPA1_0279 locus 75.45 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0279 locus 75.45 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0279 locus 82.96 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0279 locus 77.57 () Automated name-based View Maps
POPA1_0293 locus 55.49 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0293 locus 48.99 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0293 locus 62.09 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0293 locus 55.49 () Automated name-based View Maps
POPA1_0294 locus 47.47 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0294 locus 40.40 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0294 locus 47.47 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0294 locus 56.63 () Automated name-based View Maps
POPA1_0302 locus 62.78 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0302 locus 62.78 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0302 locus 60.65 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0302 locus 69.74 () Automated name-based View Maps
POPA1_0324 locus 57.01 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0324 locus 50.54 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0324 locus 57.01 () Automated name-based View Maps
POPA1_0332 locus 15.40 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0332 locus 15.40 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0332 locus 11.66 () Automated name-based View Maps
POPA1_0338 locus 117.80 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0338 locus 117.80 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0338 locus 129.79 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0338 locus 118.98 () Automated name-based View Maps
POPA1_0357 locus 100.69 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0357 locus 100.69 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0357 locus 103.99 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0357 locus 95.90 () Automated name-based View Maps
POPA1_0396 locus 96.92 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0396 locus 96.92 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0396 locus 98.68 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0396 locus 90.30 () Automated name-based View Maps
POPA1_0419 locus 3.75 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0419 locus 5.00 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0419 locus 4.71 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0419 locus 3.75 () Automated name-based View Maps
POPA1_0433 locus 93.95 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0433 locus 87.00 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0433 locus 95.14 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0433 locus 93.95 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.