*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA 2009, Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPA-2009-1H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA 2009, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPA-2009-1H
Map Start: 0
Map Stop: 210.4
Features by Type:
358 locus
358 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 358.       Previous | of 15 | Next
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0434 locus 86.19 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0434 locus 88.88 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0434 locus 86.19 () Automated name-based View Maps
POPA1_0438 locus 50 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0438 locus 42.42 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0438 locus 57.71 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0438 locus 50 () Automated name-based View Maps
POPA1_0443 locus 140.53 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0443 locus 133 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0443 locus 140.53 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0443 locus 143.2 () Automated name-based View Maps
POPA1_0460 locus 0.95 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0460 locus 6.78 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0460 locus 3.21 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0460 locus 0.95 () Automated name-based View Maps
POPA1_0466 locus 80.26 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0466 locus 89.74 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0466 locus 80.26 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0466 locus 84.71 () Automated name-based View Maps
POPA1_0470 locus 49.7 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0470 locus 42.42 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0470 locus 49.7 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0470 locus 47.7 () Automated name-based View Maps
POPA1_0471 locus 88.23 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0471 locus 89.77 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0471 locus 88.23 () Automated name-based View Maps
POPA1_0516 locus 65.53 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0516 locus 63.14 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0516 locus 65.53 () Automated name-based View Maps
POPA1_0520 locus 55.49 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0520 locus 49.1 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0520 locus 45.2 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0520 locus 55.49 () Automated name-based View Maps
POPA1_0522 locus 99.19 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0522 locus 101.34 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0522 locus 99.19 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0522 locus 93.7 () Automated name-based View Maps
POPA1_0526 locus 47.47 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0526 locus 46.5 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0526 locus 40.4 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0526 locus 47.47 () Automated name-based View Maps
POPA1_0552 locus 59.71 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0552 locus 54.54 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0552 locus 59.71 () Automated name-based View Maps
POPA1_0586 locus 121.77 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0586 locus 117.5 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0586 locus 123.1 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0586 locus 121.77 () Automated name-based View Maps
POPA1_0590 locus 138.31 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0590 locus 132.5 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0590 locus 138.31 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0590 locus 141.46 () Automated name-based View Maps
POPA1_0597 locus 42.52 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0597 locus 36.64 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0597 locus 43.1 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0597 locus 42.52 () Automated name-based View Maps
POPA1_0617 locus 61.53 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0617 locus 59.29 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0617 locus 57.3 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0617 locus 68.66 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0617 locus 61.53 () Automated name-based View Maps
POPA1_0644 locus 127.1 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0644 locus 119.7 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0644 locus 128.63 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0644 locus 127.1 () Automated name-based View Maps
POPA1_0686 locus 71.43 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0686 locus 67.9 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0686 locus 77.92 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0686 locus 71.43 () Automated name-based View Maps
POPA1_0722 locus 125.27 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0722 locus 126.61 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0722 locus 125.27 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0722 locus 118.6 () Automated name-based View Maps
POPA1_0729 locus 116.31 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0729 locus 116.24 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0729 locus 116.31 () Automated name-based View Maps
POPA1_0744 locus 26.11 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0744 locus 23.62 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0744 locus 26.11 () Automated name-based View Maps
POPA1_0757 locus 23.86 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0757 locus 22.04 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0757 locus 23.86 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0757 locus 28.1 () Automated name-based View Maps
POPA1_0760 locus 34.83 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0760 locus 34.83 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0760 locus 35.7 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0760 locus 28.2 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0760 locus 46.62 () Automated name-based View Maps
POPA1_0764 locus 40.99 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0764 locus 41.5 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0764 locus 40.99 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0764 locus 34.45 () Automated name-based View Maps
POPA1_0768 locus 59.71 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H POPA1_0768 locus 52.63 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0768 locus 59.71 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0768 locus 52.3 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0768 locus 65.37 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.