*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA 2009, Consensus
(Reference Set)
Barley-Barley, OPA123-2008, Consensus
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPA-2009-6H Hordeum-OPA123-2008-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA 2009, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPA-2009-6H
Map Start: 0.00
Map Stop: 199.22
Features by Type:
367 locus
367 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 367.       of 15 | Next
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-6H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
MWG798A locus 199.22 Barley - Barley, IxF - Hordeum-Graner2-6H MWG798A locus 136.30 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-6H MWG798A locus 156.60 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H MWG798A locus 156.03 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H MWG798A locus 141.49 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-6H MWG798A locus 139.70 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-6H MWG798A locus 139.70 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H MWG798A locus 139.60 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H MWG798A locus 157.50 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H MWG798A locus 157.56 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-6H MWG798A locus 162.70 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H MWG798A locus 133.00 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 MWG798A locus 156.03 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H MWG798A locus 136.10 () Automated name-based View Maps
Barley - Barley, Pilot OPA1, Consensus - Hordeum-PilotOPA1-6H MWG798A locus 136.03 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H MWG798A locus 151.60 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H MWG798A locus 147.34 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSR - Hordeum-SxM-SSR-6H MWG798A locus 163.50 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-6H MWG798A locus 176.50 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H MWG798A locus 156.70 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H MWG798A locus 156.03 () Automated name-based View Maps
POPA1_0003 locus 52.75 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0003 locus 56.06 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0003 locus 52.75 () Automated name-based View Maps
POPA1_0013 locus 45.44 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0013 locus 49.67 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0013 locus 49.10 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0013 locus 45.44 () Automated name-based View Maps
POPA1_0015 locus 97.39 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0015 locus 95.00 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0015 locus 111.08 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0015 locus 97.39 () Automated name-based View Maps
POPA1_0023 locus 22.35 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0023 locus 31.16 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0023 locus 22.35 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0023 locus 24.91 () Automated name-based View Maps
POPA1_0040 locus 65.03 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0040 locus 66.10 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0040 locus 65.03 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0040 locus 74.65 () Automated name-based View Maps
POPA1_0061 locus 42.36 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0061 locus 43.60 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0061 locus 44.96 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0061 locus 42.36 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0061 locus 57.62 () Automated name-based View Maps
POPA1_0064 locus 21.69 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0064 locus 21.69 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0064 locus 30.07 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0064 locus 23.62 () Automated name-based View Maps
POPA1_0107 locus 119.02 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0107 locus 127.76 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0107 locus 149.93 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0107 locus 119.02 () Automated name-based View Maps
POPA1_0120 locus 3.11 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0120 locus 6.54 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0120 locus 3.11 () Automated name-based View Maps
POPA1_0124 locus 65.03 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0124 locus 74.65 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0124 locus 65.03 () Automated name-based View Maps
POPA1_0129 locus 42.36 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0129 locus 57.62 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0129 locus 42.36 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0129 locus 44.96 () Automated name-based View Maps
POPA1_0136 locus 24.36 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0136 locus 24.50 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0136 locus 24.36 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0136 locus 27.33 () Automated name-based View Maps
POPA1_0139 locus 97.39 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0139 locus 111.08 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0139 locus 119.50 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0139 locus 97.39 () Automated name-based View Maps
POPA1_0165 locus 16.97 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0165 locus 16.97 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0165 locus 23.62 () Automated name-based View Maps
POPA1_0175 locus 119.02 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0175 locus 119.02 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0175 locus 113.20 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0175 locus 130.38 () Automated name-based View Maps
POPA1_0185 locus 81.88 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0185 locus 102.94 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0185 locus 93.44 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0185 locus 81.88 () Automated name-based View Maps
POPA1_0189 locus 60.23 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0189 locus 60.23 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0189 locus 60.60 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0189 locus 65.83 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0189 locus 78.56 () Automated name-based View Maps
POPA1_0202 locus 90.15 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0202 locus 112.90 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0202 locus 102.62 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0202 locus 90.15 () Automated name-based View Maps
POPA1_0220 locus 81.17 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0220 locus 75.50 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0220 locus 88.88 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0220 locus 81.17 () Automated name-based View Maps
POPA1_0227 locus 55.94 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0227 locus 55.40 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0227 locus 60.65 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0227 locus 55.94 () Automated name-based View Maps
POPA1_0239 locus 112.32 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0239 locus 112.32 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0239 locus 122.14 () Automated name-based View Maps
POPA1_0244 locus 43.15 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0244 locus 43.15 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0244 locus 48.42 () Automated name-based View Maps
POPA1_0270 locus 60.23 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0270 locus 60.23 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0270 locus 64.65 () Automated name-based View Maps
POPA1_0323 locus 55.65 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0323 locus 59.25 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H POPA1_0323 locus 55.00 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H POPA1_0323 locus 67.42 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0323 locus 55.65 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.