*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA 2011, Consensus
(Reference Set)
Barley-Barley, 2012 9KSNP
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPAConsensus-2011-1H Barley, 2012 9KSNP 1H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA 2011, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPAConsensus-2011-1H
Map Start: 0.00
Map Stop: 143.20
Features by Type:
345 locus
345 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 345.       of 14 | Next
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0002 locus 64.44 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0002 locus 76.42 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0002 locus 66.70 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0002 locus 66.70 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0002 locus 61.50 () Automated name-based View Maps
POPA1_0006 locus 76.92 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0006 locus 73.94 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0006 locus 73.94 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0006 locus 71.00 () Automated name-based View Maps
POPA1_0030 locus 17.40 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0030 locus 21.30 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0030 locus 18.05 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0030 locus 18.05 () Automated name-based View Maps
POPA1_0041 locus 138.86 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0041 locus 135.56 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0041 locus 135.56 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0041 locus 153.01 () Automated name-based View Maps
POPA1_0043 locus 63.74 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0043 locus 60.80 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0043 locus 65.96 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0043 locus 65.96 () Automated name-based View Maps
POPA1_0075 locus 45.20 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0075 locus 55.49 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0075 locus 48.40 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0075 locus 55.49 () Automated name-based View Maps
POPA1_0111 locus 105.77 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0111 locus 112.05 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0111 locus 101.45 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0111 locus 97.90 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0111 locus 101.45 () Automated name-based View Maps
POPA1_0176 locus 58.59 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0176 locus 61.53 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0176 locus 61.53 () Automated name-based View Maps
POPA1_0186 locus 22.04 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0186 locus 33.23 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0186 locus 23.86 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0186 locus 23.86 () Automated name-based View Maps
POPA1_0238 locus 30.15 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0238 locus 36.95 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0238 locus 36.95 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0238 locus 51.04 () Automated name-based View Maps
POPA1_0259 locus 40.40 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0259 locus 47.47 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0259 locus 46.30 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0259 locus 47.47 () Automated name-based View Maps
POPA1_0275 locus 35.77 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0275 locus 42.52 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0275 locus 42.52 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0275 locus 42.80 () Automated name-based View Maps
POPA1_0279 locus 77.57 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0279 locus 75.45 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0279 locus 75.45 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0279 locus 82.96 () Automated name-based View Maps
POPA1_0293 locus 48.99 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0293 locus 55.49 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0293 locus 62.09 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0293 locus 55.49 () Automated name-based View Maps
POPA1_0294 locus 40.40 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0294 locus 47.47 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0294 locus 47.47 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0294 locus 56.63 () Automated name-based View Maps
POPA1_0302 locus 60.65 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0302 locus 62.78 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0302 locus 62.78 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0302 locus 69.74 () Automated name-based View Maps
POPA1_0324 locus 50.54 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0324 locus 57.01 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0324 locus 57.01 () Automated name-based View Maps
POPA1_0332 locus 11.66 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0332 locus 15.40 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0332 locus 15.40 () Automated name-based View Maps
POPA1_0338 locus 118.98 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0338 locus 117.80 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0338 locus 129.79 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0338 locus 117.80 () Automated name-based View Maps
POPA1_0357 locus 103.99 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0357 locus 95.90 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0357 locus 100.69 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0357 locus 100.69 () Automated name-based View Maps
POPA1_0396 locus 98.68 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0396 locus 96.92 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0396 locus 90.30 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0396 locus 96.92 () Automated name-based View Maps
POPA1_0419 locus 4.71 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0419 locus 5.00 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0419 locus 3.75 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0419 locus 3.75 () Automated name-based View Maps
POPA1_0433 locus 95.14 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0433 locus 87.00 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0433 locus 93.95 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0433 locus 93.95 () Automated name-based View Maps
POPA1_0434 locus 88.88 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0434 locus 86.19 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0434 locus 86.19 () Automated name-based View Maps
POPA1_0438 locus 42.42 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0438 locus 57.71 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0438 locus 50.00 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0438 locus 50.00 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.