*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA 2011, Consensus
(Reference Set)
Barley-Barley, OPA123-2008, Consensus
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPAConsensus-2011-4H Hordeum-OPA123-2008-4H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA 2011, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPAConsensus-2011-4H
Map Start: 0.00
Map Stop: 146.48
Features by Type:
359 locus
359 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 359.       of 15 | Next
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-4H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0010 locus 77.66 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0010 locus 66.00 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0010 locus 66.00 () Automated name-based View Maps
POPA1_0028 locus 56.22 No other positions
POPA1_0031 locus 30.37 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0031 locus 28.40 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0031 locus 33.54 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0031 locus 28.40 () Automated name-based View Maps
POPA1_0046 locus 62.81 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0046 locus 55.63 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0046 locus 55.63 () Automated name-based View Maps
POPA1_0048 locus 46.97 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0048 locus 42.45 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0048 locus 43.40 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0048 locus 45.70 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0048 locus 42.45 () Automated name-based View Maps
POPA1_0052 locus 76.31 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0052 locus 65.05 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0052 locus 63.31 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0052 locus 65.05 () Automated name-based View Maps
POPA1_0090 locus 86.01 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0090 locus 76.03 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0090 locus 76.03 () Automated name-based View Maps
POPA1_0093 locus 56.22 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0093 locus 51.40 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0093 locus 48.50 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0093 locus 48.50 () Automated name-based View Maps
POPA1_0113 locus 19.45 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0113 locus 14.70 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0113 locus 19.52 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0113 locus 19.52 () Automated name-based View Maps
POPA1_0123 locus 130.81 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0123 locus 108.70 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0123 locus 108.70 () Automated name-based View Maps
POPA1_0132 locus 26.20 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0132 locus 24.59 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0132 locus 24.59 () Automated name-based View Maps
POPA1_0208 locus 2.60 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0208 locus 3.74 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0208 locus 3.60 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0208 locus 3.74 () Automated name-based View Maps
POPA1_0221 locus 22.93 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0221 locus 21.61 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0221 locus 21.61 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0221 locus 27.03 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0221 locus 18.30 () Automated name-based View Maps
POPA1_0223 locus 19.45 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0223 locus 25.94 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0223 locus 20.12 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0223 locus 20.12 () Automated name-based View Maps
POPA1_0247 locus 87.01 No other positions
POPA1_0261 locus 53.94 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0261 locus 52.27 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0261 locus 48.50 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0261 locus 48.50 () Automated name-based View Maps
POPA1_0262 locus 63.44 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0262 locus 54.44 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0262 locus 55.63 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0262 locus 55.63 () Automated name-based View Maps
POPA1_0269 locus 138.70 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0269 locus 117.60 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0269 locus 117.60 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0269 locus 113.40 () Automated name-based View Maps
POPA1_0309 locus 85.07 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0309 locus 75.44 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0309 locus 76.03 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0309 locus 76.03 () Automated name-based View Maps
POPA1_0319 locus 11.04 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0319 locus 8.25 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0319 locus 8.25 () Automated name-based View Maps
POPA1_0334 locus 113.95 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0334 locus 103.11 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0334 locus 98.56 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0334 locus 103.11 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 4H POPA1_0334 locus 102.50 () Automated name-based View Maps
POPA1_0379 locus 58.20 No other positions
POPA1_0387 locus 130.81 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0387 locus 119.84 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0387 locus 119.84 () Automated name-based View Maps
POPA1_0409 locus 3.20 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0409 locus 3.74 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0409 locus 3.74 () Automated name-based View Maps
POPA1_0411 locus 56.22 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-4H POPA1_0411 locus 51.30 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-4H POPA1_0411 locus 51.30 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-4H POPA1_0411 locus 52.27 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.