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Map Set Barley-Barley, OWB, 2005
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OWB, 2005 [ View Map Set Info ]
Map Name: Hordeum-OWB-2005-5H
Map Start: 0
Map Stop: 225.2
Features by Type:
37 locus
37 Total

Map Features

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Items 26 to 37 of 37.       Previous | of 2
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-5H
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Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
scssr02503 locus 44.1 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scssr02503 locus 48.64 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scssr02503 locus 48.64 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-5H scssr02503 locus 42.39 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-5H scssr02503 locus 7.19 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H scssr02503 locus 44.3 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H scssr02503 locus 57.26 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scssr02503 locus 48.64 () Automated name-based View Maps
NRG045A locus 54.6 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H NRG045A locus 55.7 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H NRG045A locus 68.18 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-5H NRG045A locus 48.9 () Automated name-based View Maps
scsnp04260 locus 55.7 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H scsnp04260 locus 69.27 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp04260 locus 63.4 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H scsnp04260 locus 56.5 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp04260 locus 63.4 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-5H scsnp04260 locus 0 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp04260 locus 63.4 () Automated name-based View Maps
scind16991 locus 82.4 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H scind16991 locus 71 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H scind16991 locus 94.97 () Automated name-based View Maps
scsnp06144 locus 89.9 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp06144 locus 89.67 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H scsnp06144 locus 75.3 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp06144 locus 89.67 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H scsnp06144 locus 102.68 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp06144 locus 89.67 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-5H scsnp06144 locus 45.56 () Automated name-based View Maps
scsnp00177 locus 127.7 Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-5H scsnp00177 locus 84.66 () Automated name-based View Maps
Barley - Barley, Nure x Tremois - Hv-Nure/Tremois-5H scsnp00177 locus 109.3 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H scsnp00177 locus 140.73 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp00177 locus 124.38 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp00177 locus 124.38 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H scsnp00177 locus 108.2 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp00177 locus 124.38 () Automated name-based View Maps
BE456118A locus 170.1 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H BE456118A locus 133 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-5H BE456118A locus 163.6 () Automated name-based View Maps
scsnp02109 locus 192.6 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 scsnp02109 locus 174.16 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H scsnp02109 locus 151 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-5H scsnp02109 locus 149.04 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H scsnp02109 locus 211.59 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H scsnp02109 locus 174.16 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H scsnp02109 locus 174.16 () Automated name-based View Maps
JS10B locus 198.4 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H JS10B locus 217.1 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-5H JS10B locus 193.3 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H JS10B locus 154.1 () Automated name-based View Maps
DsT-33 locus 207.5 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H DsT-33 locus 225.84 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-5H DsT-33 locus 203.4 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H DsT-33 locus 163.1 () Automated name-based View Maps
MWG602A locus 223 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H MWG602A locus 177 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-5H MWG602A locus 161.62 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H MWG602A locus 203.54 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H MWG602A locus 239.08 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H MWG602A locus 203.54 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-5H MWG602A locus 180.73 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-5H MWG602A locus 210.5 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-5H MWG602A locus 219.2 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 MWG602A locus 203.54 () Automated name-based View Maps
0SU-STS1 locus 134.1 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H 0SU-STS1 locus 146.42 () Automated name-based View Maps

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