*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OWB, 2005
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OWB-2005-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OWB, 2005 [ View Map Set Info ]
Map Name: Hordeum-OWB-2005-6H
Map Start: 0
Map Stop: 167
Features by Type:
35 locus
35 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 35 of 35.       Previous | of 2
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-6H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
scssr02093 locus 70.9 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scssr02093 locus 70.32 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H scssr02093 locus 67.2 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scssr02093 locus 70.32 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H scssr02093 locus 72.68 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H scssr02093 locus 67.42 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H scssr02093 locus 61.4 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scssr02093 locus 70.32 () Automated name-based View Maps
Bmac0218c locus 87.8 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H Bmac0218c locus 89.33 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H Bmac0218c locus 89.33 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H Bmac0218c locus 88.1 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H Bmac0218c locus 72.2 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 Bmac0218c locus 89.33 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-6H Bmac0218c locus 67.8 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-6H Bmac0218c locus 71.99 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H Bmac0218c locus 83.5 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H Bmac0218c locus 71.99 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H Bmac0218c locus 88.85 () Automated name-based View Maps
scsnp21226 locus 98.5 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H scsnp21226 locus 93.06 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H scsnp21226 locus 74.8 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp21226 locus 93.18 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H scsnp21226 locus 99.56 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp21226 locus 93.18 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp21226 locus 93.18 () Automated name-based View Maps
scind04312b locus 131.6 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H scind04312b locus 124.98 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H scind04312b locus 104.3 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scind04312b locus 118.53 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scind04312b locus 118.53 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scind04312b locus 118.53 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H scind04312b locus 133.93 () Automated name-based View Maps
DsT-18 locus 144.7 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H DsT-18 locus 114 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H DsT-18 locus 137.8 () Automated name-based View Maps
DsT-32B locus 145.9 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H DsT-32B locus 114.5 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H DsT-32B locus 139.59 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H DsT-32B locus 139.2 () Automated name-based View Maps
DsT-22 locus 152.4 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H DsT-22 locus 119.7 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H DsT-22 locus 146.7 () Automated name-based View Maps
DsT-28 locus 159.1 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H DsT-28 locus 126.4 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H DsT-28 locus 152.8 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H DsT-28 locus 151.01 () Automated name-based View Maps
DsT-74 locus 160.5 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H DsT-74 locus 153.19 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H DsT-74 locus 132 () Automated name-based View Maps
DsT-71 locus 167 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H DsT-71 locus 135.6 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.