*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OWB, SNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OWB-SNP-3H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OWB, SNP [ View Map Set Info ]
Map Name: Hordeum-OWB-SNP-3H
Map Start: 0.00
Map Stop: 220.50
Features by Type:
43 locus
43 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 43 of 43.       Previous | of 2
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-3H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
scsnp13296 locus 52.00 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp13296 locus 30.00 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp13296 locus 30.00 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp13296 locus 30.00 () Automated name-based View Maps
scsnp16710 locus 56.45 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp16710 locus 34.03 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp16710 locus 34.03 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp16710 locus 34.03 () Automated name-based View Maps
scsnp03441 locus 62.40 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp03441 locus 39.50 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp03441 locus 39.50 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp03441 locus 39.50 () Automated name-based View Maps
scsnp01374 locus 63.42 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp01374 locus 40.38 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp01374 locus 40.38 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp01374 locus 40.38 () Automated name-based View Maps
scsnp03043 locus 68.47 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp03043 locus 44.44 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp03043 locus 44.44 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp03043 locus 44.44 () Automated name-based View Maps
scsnp17236 locus 69.77 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp17236 locus 45.74 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp17236 locus 45.74 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp17236 locus 45.74 () Automated name-based View Maps
scsnp06074 locus 71.89 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp06074 locus 48.54 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp06074 locus 48.54 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp06074 locus 48.54 () Automated name-based View Maps
scsnp03835 locus 80.45 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp03835 locus 56.02 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp03835 locus 56.02 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp03835 locus 56.02 () Automated name-based View Maps
scsnp19175 locus 84.84 Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H scsnp19175 locus 56.28 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp19175 locus 60.72 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp19175 locus 60.72 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp19175 locus 60.72 () Automated name-based View Maps
scsnp44574 locus 98.43 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp44574 locus 69.82 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp44574 locus 69.82 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp44574 locus 69.82 () Automated name-based View Maps
scsnp05580 locus 117.11 Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H scsnp05580 locus 66.03 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp05580 locus 77.65 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp05580 locus 77.65 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp05580 locus 77.65 () Automated name-based View Maps
X3.2 locus 128.02 Barley - Barley, OWB - Hordeum-OWB-3H X3.2 locus 124.60 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 X3.2 locus 88.18 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H X3.2 locus 88.18 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H X3.2 locus 88.18 () Automated name-based View Maps
X3.3 locus 132.91 Barley - Barley, OWB - Hordeum-OWB-3H X3.3 locus 129.30 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 X3.3 locus 91.48 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H X3.3 locus 91.48 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H X3.3 locus 91.48 () Automated name-based View Maps
scind07197 locus 141.97 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scind07197 locus 98.20 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H scind07197 locus 88.32 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scind07197 locus 98.20 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scind07197 locus 98.20 () Automated name-based View Maps
scsnp19616 locus 156.80 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp19616 locus 111.05 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp19616 locus 111.05 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H scsnp19616 locus 95.72 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp19616 locus 111.05 () Automated name-based View Maps
scsnp07681 locus 160.72 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp07681 locus 116.50 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp07681 locus 116.50 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp07681 locus 116.50 () Automated name-based View Maps
scsnp05754 locus 166.63 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp05754 locus 122.55 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp05754 locus 122.55 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp05754 locus 122.55 () Automated name-based View Maps
scsnp02838 locus 168.60 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp02838 locus 125.55 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp02838 locus 125.55 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-3H scsnp02838 locus 119.33 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp02838 locus 125.55 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.