*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OWB, SNP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OWB-SNP-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OWB, SNP [ View Map Set Info ]
Map Name: Hordeum-OWB-SNP-6H
Map Start: 0
Map Stop: 165.19
Features by Type:
37 locus
37 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 37 of 37.       Previous | of 2
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
scsnp01797 locus 73.41 Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H scsnp01797 locus 59.09 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp01797 locus 69.08 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp01797 locus 69.08 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp01797 locus 69.08 () Automated name-based View Maps
scsnp14681 locus 71.67 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp14681 locus 69.72 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp14681 locus 69.72 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp14681 locus 69.72 () Automated name-based View Maps
X6.3 locus 82.07 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H X6.3 locus 79.26 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 X6.3 locus 79.26 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H X6.3 locus 79.26 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H X6.3 locus 81.1 () Automated name-based View Maps
X6.4 locus 125.34 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H X6.4 locus 110.03 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H X6.4 locus 121.6 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 X6.4 locus 110.03 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H X6.4 locus 110.03 () Automated name-based View Maps
scsnp40618 locus 128.93 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp40618 locus 113.53 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp40618 locus 113.53 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp40618 locus 113.53 () Automated name-based View Maps
X6.5 locus 137.33 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 X6.5 locus 121.92 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H X6.5 locus 121.92 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H X6.5 locus 137.2 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H X6.5 locus 121.92 () Automated name-based View Maps
scsnp04275 locus 146.48 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp04275 locus 131.08 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp04275 locus 131.08 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp04275 locus 131.08 () Automated name-based View Maps
scsnp03149 locus 148.71 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp03149 locus 133.3 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp03149 locus 133.3 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp03149 locus 133.3 () Automated name-based View Maps
scsnp04273 locus 153.2 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp04273 locus 137.79 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp04273 locus 137.79 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp04273 locus 137.79 () Automated name-based View Maps
scsnp04220 locus 158.55 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp04220 locus 143.14 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp04220 locus 143.14 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp04220 locus 143.14 () Automated name-based View Maps
X6.6 locus 164.96 Barley - Barley, OWB - Hordeum-OWB-6H X6.6 locus 165 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H X6.6 locus 149.55 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 X6.6 locus 149.55 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H X6.6 locus 149.55 () Automated name-based View Maps
scsnp04135 locus 165.19 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H scsnp04135 locus 149.78 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 scsnp04135 locus 149.78 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H scsnp04135 locus 149.78 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.