*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, USDA Core, 2014 Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Barley-Core-2014_6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, USDA Core, 2014 Consensus [ View Map Set Info ]
Map Name: Barley-Core-2014_6H
Map Start: 0
Map Stop: 139.39
Features by Type:
738 locus
738 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 738.       of 30 | Next
Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_6H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
BOPA2_12_30319 locus 0 No other positions
POPA2_0028 locus 0 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA2_0028 locus 0 () Automated name-based View Maps
BOPA1_11_20232 locus 0 No other positions
SCRI_RS_144034 locus 139.39 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H SCRI_RS_144034 locus 126.6 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP v2 - Barley2012_9KSNPv2-6H SCRI_RS_144034 locus 126.6 (cM) Automated name-based View Maps
BOPA2_12_30956 locus 139.39 No other positions
BOPA1_11_20537 locus 139.39 No other positions
SCRI_RS_229960 locus 136.62 Barley - Barley, 2012 9KSNP v2 - Barley2012_9KSNPv2-6H SCRI_RS_229960 locus 126.5 (cM) Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H SCRI_RS_229960 locus 126.5 () Automated name-based View Maps
SCRI_RS_223104 locus 136.62 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H SCRI_RS_223104 locus 126.5 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP v2 - Barley2012_9KSNPv2-6H SCRI_RS_223104 locus 126.5 (cM) Automated name-based View Maps
SCRI_RS_10811 locus 136.62 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H SCRI_RS_10811 locus 126.5 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP v2 - Barley2012_9KSNPv2-6H SCRI_RS_10811 locus 126.5 (cM) Automated name-based View Maps
BOPA2_12_30627 locus 133.83 No other positions
BOPA1_11_10390 locus 130.44 No other positions
SCRI_RS_17542 locus 129.42 Barley - Barley, 2012 9KSNP v2 - Barley2012_9KSNPv2-6H SCRI_RS_17542 locus 119.3 (cM) Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H SCRI_RS_17542 locus 119.3 () Automated name-based View Maps
BOPA1_11_21112 locus 129.32 No other positions
BOPA2_12_31469 locus 129.22 No other positions
SCRI_RS_200962 locus 129.22 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H SCRI_RS_200962 locus 119.1 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP v2 - Barley2012_9KSNPv2-6H SCRI_RS_200962 locus 119.1 (cM) Automated name-based View Maps
SCRI_RS_143994 locus 129.22 Barley - Barley, 2012 9KSNP v2 - Barley2012_9KSNPv2-6H SCRI_RS_143994 locus 119.1 (cM) Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H SCRI_RS_143994 locus 119.1 () Automated name-based View Maps
BOPA2_12_31498 locus 129.22 No other positions
BOPA1_11_20687 locus 129.22 No other positions
BOPA1_11_11111 locus 129.22 No other positions
BOPA2_12_30414 locus 129.12 No other positions
POPA2_0353 locus 129.12 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA2_0353 locus 124.85 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-6H POPA2_0353 locus 124.85 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA2_0353 locus 137.41 () Automated name-based View Maps
POPA2_0270 locus 129.12 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-6H POPA2_0270 locus 124.85 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA2_0270 locus 137.41 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA2_0270 locus 124.85 () Automated name-based View Maps
POPA1_0290 locus 129.12 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-6H POPA1_0290 locus 124.85 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-6H POPA1_0290 locus 137.41 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-6H POPA1_0290 locus 124.85 () Automated name-based View Maps
SCRI_RS_9648 locus 129.12 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H SCRI_RS_9648 locus 119 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP v2 - Barley2012_9KSNPv2-6H SCRI_RS_9648 locus 119 (cM) Automated name-based View Maps
SCRI_RS_225737 locus 129.12 Barley - Barley, 2012 9KSNP v2 - Barley2012_9KSNPv2-6H SCRI_RS_225737 locus 119 (cM) Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 6H SCRI_RS_225737 locus 119 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.