*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, VxHs
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Graner1-7H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, VxHs [ View Map Set Info ]
Map Name: Hordeum-Graner1-7H
Map Start: 10.00
Map Stop: 308.00
Features by Type:
19 locus
19 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 19 of 19.
Barley - Barley, VxHs - Hordeum-Graner1-7H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
MWG530 locus 33.50 Rye - Rye, P87 x P105 - Secale-PxP-4 Xmwg530 locus 111.40 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H MWG530 locus 18.60 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H MWG530 locus 15.25 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H MWG530 locus -65.40 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H MWG530 locus 2.00 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-7H MWG530 locus 21.80 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H MWG530 locus 12.40 () Automated name-based View Maps
MWG527 locus 75.50 Barley - Barley consensus - Barley-Consensus-7H MWG527 locus -40.80 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-7H MWG527 locus 54.50 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H MWG527 locus 35.39 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H MWG527 locus 37.00 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H MWG527 locus 31.70 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H MWG527 locus 36.30 () Automated name-based View Maps
MWG626 locus 175.00 Barley - Barley, IxF - Hordeum-Graner2-7H MWG626 locus 113.30 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-7H MWG626 locus 93.30 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H MWG626 locus 78.10 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H MWG626 locus 1.10 () Automated name-based View Maps
Barley - Barley, IxF, Stein2006 - Hv-IxF-Stein-7H MWG626-7H locus 103.68 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H MWG626 locus 80.60 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H MWG626 locus 74.00 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H MWG626 locus 79.79 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-7H MWG626 locus 101.40 () Automated name-based View Maps
MWG3 locus 150.00 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-7H MWG003 locus 83.32 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-7H MWG3 locus 69.22 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H MWG3 locus 71.70 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H MWG3 locus 74.58 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H MWG3 locus 2.40 () Automated name-based View Maps
MWG633 locus 260.50 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H MWG633 locus 109.70 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H MWG633 locus 108.27 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H MWG633 locus 104.80 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-7H MWG633 locus 158.10 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-7H MWG633 locus 109.00 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H MWG633 locus 25.10 () Automated name-based View Maps
MWG4a locus 65.50 No other positions
MWG18 locus 96.00 No other positions
MWG24 locus 285.00 No other positions
MWG35 locus 10.00 Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-7H MWG35 locus 1.98 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-7H MWG035 locus 16.50 () Automated name-based View Maps
MWG39 locus 140.00 No other positions
MWG47 locus 28.00 No other positions
MWG53 locus 221.00 No other positions
MWG66 locus 158.00 No other positions
MWG70 locus 278.00 No other positions
MWG86 locus 308.00 No other positions
MWG606 locus 138.00 No other positions
MWG622a locus 187.50 No other positions
MWG622b locus 57.00 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H MWG622b locus 36.30 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H MWG622b locus 35.39 () Automated name-based View Maps
MWG710a locus 167.00 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.