*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley genes 2
(Reference Set)
Barley-Barley, BinMap 2005
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Genes2-3H Hordeum-Bins-3H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
bin
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley genes 2 [ View Map Set Info ]
Map Name: Hordeum-Genes2-3H
Map Start: -105.00
Map Stop: 94.00
Features by Type:
39 locus
39 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 39.       of 2 | Next
Barley - Barley genes 2 - Hordeum-Genes2-3H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
abo6 locus 14.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H abo6 locus 61.30 () Automated name-based View Maps
abo9 locus 23.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H abo9 locus 45.40 () Automated name-based View Maps
alm locus 20.00 Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-3H alm locus 61.00 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H alm locus 58.58 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-3H alm locus 36.00 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H alm locus 42.72 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-3H alm locus 59.50 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 alm locus 42.72 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H alm locus 42.72 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-3H alm locus 62.20 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-3H alm locus 65.84 () Automated name-based View Maps
als locus -40.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H als locus 122.20 () Automated name-based View Maps
ant17 locus 70.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H ant17 locus 11.40 () Automated name-based View Maps
ari-a locus 10.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H ari-a locus 64.30 () Automated name-based View Maps
cer-r locus -4.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H cer-r locus 81.60 () Automated name-based View Maps
cer-zd locus 1.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H cer-zd locus 69.30 () Automated name-based View Maps
cer-zn locus -12.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H cer-zn locus 91.40 () Automated name-based View Maps
cur2 locus -85.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H cur2 locus 155.50 () Automated name-based View Maps
dsp10 locus 17.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H dsp10 locus 55.60 () Automated name-based View Maps
eam10 locus -101.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H eam10 locus 171.70 () Automated name-based View Maps
ert-c locus 5.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H ert-c locus 67.30 () Automated name-based View Maps
ert-ii locus 2.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H ert-ii locus 68.30 () Automated name-based View Maps
fch2 locus -93.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H fch2 locus 166.80 () Automated name-based View Maps
gsh2 locus -35.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H gsh2 locus 114.70 () Automated name-based View Maps
lzd locus 37.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H lzd locus 40.20 () Automated name-based View Maps
msg5 locus 11.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H msg5 locus 63.30 () Automated name-based View Maps
Pub locus -54.00 Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H Pub locus 133.20 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-3H Pub locus 177.25 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-3H Pub locus 137.60 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 Pub locus 133.20 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H Pub locus 133.20 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-3H Pub locus 149.70 () Automated name-based View Maps
Rph7 locus 94.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H Rph7 locus 5.40 () Automated name-based View Maps
Rph10 locus -90.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H Rph10 locus 163.50 () Automated name-based View Maps
Ryd2 locus -2.00 Barley - Barley, Cali-sib x BowmanBC, QTL - Hordeum-CxB-3H Ryd2 locus 77.80 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-3H Ryd2 locus 70.30 () Automated name-based View Maps
sca locus 22.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H sca locus 48.80 () Automated name-based View Maps
sdw1 locus -40.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H sdw1 locus 122.00 () Automated name-based View Maps
sdw2 locus -54.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H sdw2 locus 134.30 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.