*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley genes 2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Genes2-6H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley genes 2 [ View Map Set Info ]
Map Name: Hordeum-Genes2-6H
Map Start: -81
Map Stop: 39
Features by Type:
26 locus
26 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 26.       of 2 | Next
Barley - Barley genes 2 - Hordeum-Genes2-6H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Amy1 locus -25 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H Amy1 locus 86.37 () Automated name-based View Maps
Barley - Barley, DxM, Dhn genes - Hordeum-DxM-Dnh-6H Amy1 locus 71.9 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 Amy1 locus 98.63 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H Amy1 locus 88.1 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-6H Amy1 locus 95.6 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H Amy1 locus 68.1 () Automated name-based View Maps
Barley - Barley, Consensus 2023, FHB - Barley-ConsensusFHB-6H Amy1 locus 79.2 (cM) Automated name-based View Maps
Barley - Barley, Dicktoo x Morex - Hordeum-DxM-6H Amy1 locus 71.9 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H Amy1 locus 97.9 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-6H Amy1 locus 18.31 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-6H Amy1 locus 80.2 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-6H Amy1 locus 111 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H Amy1 locus 98.63 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-6H Amy1 locus 94.5 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-6H Amy1 locus 80.2 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-6H Amy1 locus 95.9 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H Amy1 locus 98.63 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-6H Amy1 locus 119.2 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-6H Amy1 locus 91.26 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H Amy1 locus 19.6 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-6H Amy1 locus 96.6 () Automated name-based View Maps
Barley - Barley, SxM basemap - Hordeum-SxM-base-6H Amy1 locus 98.2 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H Amy1 locus 84.9 () Automated name-based, Automated name-based View Maps
Barley - Barley, HxM/QTL - Hordeum-HxM-base-6H Amy1 locus 54.5 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H Amy1 locus 97 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-6H Amy1 locus 79.4 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-6H Amy1 locus 87 () Automated name-based View Maps
abo14 locus -9 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H abo14 locus 70.9 () Automated name-based View Maps
abo15 locus 39 No other positions
ant13 locus -3 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H ant13 locus 64.9 () Automated name-based View Maps
cul2 locus -4 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H cul2 locus 66.4 () Automated name-based View Maps
cur1 locus -39 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H cur1 locus 111.1 () Automated name-based View Maps
cur3 locus -29 No other positions
dsp9 locus -81 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H dsp9 locus 151.4 () Automated name-based View Maps
eam7 locus 1 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H eam7 locus 57.2 () Automated name-based View Maps
ert-e locus -81 No other positions
fch11 locus -6 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H fch11 locus 67.9 () Automated name-based View Maps
gsh4 locus -2 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H gsh4 locus 63.4 () Automated name-based View Maps
lax-b locus -32 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H lax-b locus 106.3 () Automated name-based View Maps
lax-c locus -63 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H lax-c locus 145.8 () Automated name-based View Maps
msg6 locus 2 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H msg6 locus 54.4 () Automated name-based View Maps
msg36 locus 12 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H msg36 locus 43 () Automated name-based View Maps
mtt5 locus -8 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H mtt5 locus 69.4 () Automated name-based View Maps
mul2 locus -27 No other positions
nec2 locus 6 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H nec2 locus 48.8 () Automated name-based View Maps
nec3 locus 30 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H nec3 locus 17.7 () Automated name-based View Maps
raw5 locus -37 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H raw5 locus 108.7 () Automated name-based View Maps
rob locus 0 Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-6H rob locus 69.7 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-6H rob locus 66.33 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-6H rob locus 62 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-6H rob locus 65.7 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-6H rob locus 71.02 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-6H rob locus 70.68 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-6H rob locus 71.02 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H rob locus 70.5 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-6 rob locus 71.02 () Automated name-based View Maps
Rph11 locus -61 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H Rph11 locus 141.9 () Automated name-based View Maps
sex1 locus 0 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H sex1 locus 61.9 () Automated name-based View Maps
xnt5 locus -51 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H xnt5 locus 129.9 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.