*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Physical-1H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
chromband
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-1H
Map Start: -50
Map Stop: 72
Features by Type:
9 chromband
38 rearrangement
47 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 47.       of 2 | Next
Barley - Barley, physical - Hordeum-Physical-1H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T54ai rearrangement -50 - -38 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T54ai rearrangement 50 - 62 () Automated name-based View Maps
T51ak rearrangement -50 - -30 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T51ak rearrangement 51.4 - 62 () Automated name-based View Maps
T54aj rearrangement -50 - -25 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T54aj rearrangement 55.6 - 62 () Automated name-based View Maps
T57ab rearrangement -25 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T57ab rearrangement 55.6 - 62 () Automated name-based View Maps
T57ac rearrangement -50 - -24 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T57ac rearrangement 50 - 62 () Automated name-based View Maps
T51an rearrangement -33 - -24 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T51an rearrangement 60.4 - 62 () Automated name-based View Maps
T51am rearrangement -32 - -23 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T51am rearrangement 51.4 - 62 () Automated name-based View Maps
T57aj rearrangement -40 - -19 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T57aj rearrangement 51.4 - 62 () Automated name-based View Maps
T54ag rearrangement -50 - -16 No other positions
T57ak rearrangement -50 - -12 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T57ak rearrangement 55.6 - 62 () Automated name-based View Maps
T57ad rearrangement -17 - -11 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T57ad rearrangement 51.4 - 62 () Automated name-based View Maps
T54ar rearrangement -15 - -11 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T54ar rearrangement 55.6 - 62 () Automated name-based View Maps
T56ab rearrangement -50 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T56ab rearrangement 51.4 - 62 () Automated name-based View Maps
T56ak rearrangement -50 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T56ak rearrangement 51.4 - 62 () Automated name-based View Maps
T56ao rearrangement -48 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T56ao rearrangement 51.4 - 62 () Automated name-based View Maps
T56ap rearrangement -46 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T56ap rearrangement 41.9 - 62 () Automated name-based View Maps
T53ae rearrangement -37 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T53ae rearrangement 55.6 - 62 () Automated name-based View Maps
T57ah rearrangement -35 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T57ah rearrangement 55.6 - 62 () Automated name-based View Maps
T56x rearrangement -32 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T56x rearrangement 51.4 - 62 () Automated name-based View Maps
T53ad rearrangement -17 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T53ad rearrangement 55.6 - 62 () Automated name-based View Maps
T56aj rearrangement -12 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T56aj rearrangement 55.6 - 62 () Automated name-based View Maps
T54aq rearrangement -11 - -10 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T54aq rearrangement 55.6 - 62 () Automated name-based View Maps
T57an rearrangement 66 - 72 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T57an rearrangement 62 - 159.6 () Automated name-based View Maps
T52ah rearrangement 66 - 72 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T52ah rearrangement 62 - 143.2 () Automated name-based View Maps
T52as rearrangement 46 - 72 Barley - Barley, physical - Hordeum-Physical-RFLP-1H T52as rearrangement 62 - 142.2 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.