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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, physical
(Reference Set)
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Correspondences
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Maps Hordeum-Physical-3H
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
chromband
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-3H
Map Start: -66
Map Stop: 82
Features by Type:
11 chromband
13 rearrangement
24 Total

Map Features

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Items 1 to 24 of 24.
Barley - Barley, physical - Hordeum-Physical-3H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T32aj rearrangement -66 - -56 No other positions
T35af rearrangement -55 - -40 Barley - Barley, physical - Hordeum-Physical-RFLP-3H T35af rearrangement 66.3 - 69.4 () Automated name-based View Maps
T31ak rearrangement -66 - -21 No other positions
T34ap rearrangement -55 - -21 Barley - Barley, physical - Hordeum-Physical-RFLP-3H T34ap rearrangement 36 - 69.4 () Automated name-based View Maps
T35ae rearrangement 55 - 82 Barley - Barley, physical - Hordeum-Physical-RFLP-3H T35ae rearrangement 69.4 - 80.3 () Automated name-based View Maps
T34ag rearrangement 45 - 82 Barley - Barley, physical - Hordeum-Physical-RFLP-3H T34ag rearrangement 69.4 - 101.5 () Automated name-based View Maps
T37ao rearrangement 45 - 73 Barley - Barley, physical - Hordeum-Physical-RFLP-3H T37ao rearrangement 69.4 - 138.9 () Automated name-based View Maps
T31as rearrangement 33 - 82 Barley - Barley, physical - Hordeum-Physical-RFLP-3H T31as rearrangement 69.4 - 127.6 () Automated name-based View Maps
T31am rearrangement 30 - 82 No other positions
T32am rearrangement 30 - 44 Barley - Barley, physical - Hordeum-Physical-RFLP-3H T32am rearrangement 69.4 - 80.3 () Automated name-based View Maps
T36aa rearrangement 30 Barley - Barley, physical - Hordeum-Physical-RFLP-3H T36aa rearrangement 69.4 - 78.6 () Automated name-based View Maps
T35ad rearrangement 20 - 27 No other positions
T34ae rearrangement 15 - 27 Barley - Barley, physical - Hordeum-Physical-RFLP-3H T34ae rearrangement 69.4 - 77 () Automated name-based View Maps
3H Centromere chromband -1 - 1 No other positions
3HS66 chromband -66 - -21 No other positions
3HS21 chromband -21 - -15 No other positions
3HS15 chromband -15 - -14 No other positions
3HS14 chromband -14 - -1 No other positions
3HL9 chromband 1 - 9 No other positions
3HL10 chromband 9 - 10 No other positions
3HL15 chromband 10 - 15 No other positions
3HL27 chromband 15 - 27 No other positions
3HL30 chromband 27 - 30 No other positions
3HL82 chromband 30 - 82 No other positions

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