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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Barley-Barley, physical
(Reference Set)
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Maps Hordeum-Physical-5H
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
chromband
rearrangement
Other
 
Show Labels: None Landmarks All
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Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Image Type: PNG JPEG GIF SVG *
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Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-5H
Map Start: -59
Map Stop: 90
Features by Type:
15 chromband
17 rearrangement
32 Total

Map Features

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Items 1 to 25 of 32.       of 2 | Next
Barley - Barley, physical - Hordeum-Physical-5H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T75ag rearrangement -59 - -43 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75ag rearrangement 24 - 38.9 () Automated name-based View Maps
T74ae rearrangement -59 - -43 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T74ae rearrangement -1 - 38.9 () Automated name-based View Maps
T71an rearrangement -59 - -43 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T71an rearrangement 18.4 - 38.9 () Automated name-based View Maps
T75ab rearrangement -43 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75ab rearrangement 34 - 38.9 () Automated name-based View Maps
T75aj rearrangement -43 - -22 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75aj rearrangement 34 - 38.9 () Automated name-based View Maps
T74v rearrangement 9 - 18 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T74v rearrangement 34 - 38.9 () Automated name-based View Maps
T73ao rearrangement 62 - 90 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T73ao rearrangement 38.9 - 238.2 () Automated name-based View Maps
T75an rearrangement 62 - 68 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75an rearrangement 38.9 - 138.4 () Automated name-based View Maps
T75ah rearrangement 35 - 60 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75ah rearrangement 38.9 - 96 () Automated name-based View Maps
T76au rearrangement 26 - 50 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T76au rearrangement 38.9 - 73.5 () Automated name-based View Maps
T75ao rearrangement 25 - 58 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75ao rearrangement 38.9 - 44 () Automated name-based View Maps
T75af rearrangement 25 - 58 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75af rearrangement 38.9 - 73.5 () Automated name-based View Maps
T75ap rearrangement 25 - 40 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75ap rearrangement 38.9 - 44 () Automated name-based View Maps
T72ad rearrangement 22 - 68 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T72ad rearrangement 38.9 - 73.5 () Automated name-based View Maps
T75ak rearrangement 22 - 60 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75ak rearrangement 38.9 - 96 () Automated name-based View Maps
T75ac rearrangement 22 - 48 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75ac rearrangement 38.9 - 44 () Automated name-based View Maps
T75ad rearrangement 10 - 16 Barley - Barley, physical - Hordeum-Physical-RFLP-5H T75ad rearrangement 38.9 - 44 () Automated name-based View Maps
5H(NOR) chromband -44 - -42 No other positions
5H Centromere chromband -1 - 1 No other positions
5HS59 chromband -59 - -44 No other positions
5HS43 chromband -42 - -22 No other positions
5HS22 chromband -22 - -18 No other positions
5HS18 chromband -18 - -9 No other positions
5HS9 chromband -9 - -1 No other positions
5HS10 chromband 1 - 10 No other positions

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