*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, physical
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-Physical-RFLP-5H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
rearrangement
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, physical [ View Map Set Info ]
Map Name: Hordeum-Physical-RFLP-5H
Map Start: -1
Map Stop: 294.5
Features by Type:
24 locus
39 rearrangement
63 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 63.       Previous | of 3 | Next
Barley - Barley, physical - Hordeum-Physical-RFLP-5H
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
T74ae rearrangement -1 - 38.9 Barley - Barley, physical - Hordeum-Physical-5H T74ae rearrangement -59 - -43 () Automated name-based View Maps
T71an rearrangement 18.4 - 38.9 Barley - Barley, physical - Hordeum-Physical-5H T71an rearrangement -59 - -43 () Automated name-based View Maps
T75ab rearrangement 34 - 38.9 Barley - Barley, physical - Hordeum-Physical-5H T75ab rearrangement -43 () Automated name-based View Maps
T75aj rearrangement 34 - 38.9 Barley - Barley, physical - Hordeum-Physical-5H T75aj rearrangement -43 - -22 () Automated name-based View Maps
T74v rearrangement 34 - 38.9 Barley - Barley, physical - Hordeum-Physical-5H T74v rearrangement 9 - 18 () Automated name-based View Maps
T73ao rearrangement 38.9 - 238.2 Barley - Barley, physical - Hordeum-Physical-5H T73ao rearrangement 62 - 90 () Automated name-based View Maps
T75an rearrangement 38.9 - 138.4 Barley - Barley, physical - Hordeum-Physical-5H T75an rearrangement 62 - 68 () Automated name-based View Maps
T75ah rearrangement 38.9 - 96 Barley - Barley, physical - Hordeum-Physical-5H T75ah rearrangement 35 - 60 () Automated name-based View Maps
T76au rearrangement 38.9 - 73.5 Barley - Barley, physical - Hordeum-Physical-5H T76au rearrangement 26 - 50 () Automated name-based View Maps
T75ao rearrangement 38.9 - 44 Barley - Barley, physical - Hordeum-Physical-5H T75ao rearrangement 25 - 58 () Automated name-based View Maps
T75af rearrangement 38.9 - 73.5 Barley - Barley, physical - Hordeum-Physical-5H T75af rearrangement 25 - 58 () Automated name-based View Maps
T75ap rearrangement 38.9 - 44 Barley - Barley, physical - Hordeum-Physical-5H T75ap rearrangement 25 - 40 () Automated name-based View Maps
T72ad rearrangement 38.9 - 73.5 Barley - Barley, physical - Hordeum-Physical-5H T72ad rearrangement 22 - 68 () Automated name-based View Maps
T75ak rearrangement 38.9 - 96 Barley - Barley, physical - Hordeum-Physical-5H T75ak rearrangement 22 - 60 () Automated name-based View Maps
T75ac rearrangement 38.9 - 44 Barley - Barley, physical - Hordeum-Physical-5H T75ac rearrangement 22 - 48 () Automated name-based View Maps
T75ad rearrangement 38.9 - 44 Barley - Barley, physical - Hordeum-Physical-5H T75ad rearrangement 10 - 16 () Automated name-based View Maps
T73ac rearrangement 38.9 - 44 No other positions
T73af rearrangement 38.9 - 44 No other positions
T73ai rearrangement 38.9 - 44 No other positions
T73aj rearrangement 34 - 38.9 No other positions
T73ak rearrangement 38.9 - 231 No other positions
T73al rearrangement 38.9 - 231 No other positions
T73am rearrangement 38.9 - 294.1 No other positions
T73an rearrangement 38.9 - 238.2 No other positions
T73ap rearrangement 38.9 - 51.4 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.