*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, AFLP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Avena-Yu-A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, AFLP [ View Map Set Info ]
Map Name: Avena-Yu-A
Map Start: 0.00
Map Stop: 575.80
Features by Type:
94 locus
94 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 94.       of 4 | Next
Diploid oat - Diploid Oat, AFLP - Avena-Yu-A
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
E5M11-2a locus 0.00 No other positions
E1M6-7a locus 9.20 No other positions
E5M6-2a locus 12.30 No other positions
E16M9-1a locus 13.30 No other positions
E12M12-10b locus 13.30 No other positions
E16M11-4a locus 19.60 No other positions
E16M9-6a locus 24.40 No other positions
E3M2-9b locus 27.20 No other positions
E11M10-10b locus 27.20 No other positions
E5M11-5a locus 29.80 No other positions
E15M11-2b locus 50.00 No other positions
E13M3-3b locus 52.40 No other positions
E4M4-1b locus 55.70 No other positions
Bare-E14-7a locus 58.80 No other positions
Bare-E14-6a locus 58.80 No other positions
E5M6-8b locus 64.90 No other positions
E13M3-2b locus 73.40 No other positions
Xcdo395b locus 75.10 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo395b locus 56.50 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-3 Xcdo395b locus 38.20 () Automated name-based View Maps
E11M5-9a locus 75.10 No other positions
E1M3-9b locus 81.20 No other positions
E13M15-1b locus 83.50 No other positions
E5M11-4b locus 88.30 No other positions
E3M5-4b locus 104.50 No other positions
E3M5-14b locus 117.00 No other positions
E6M14-1 locus 131.60 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.