*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, AFLP
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Avena-Yu-D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, AFLP [ View Map Set Info ]
Map Name: Avena-Yu-D
Map Start: 0
Map Stop: 332.7
Features by Type:
41 locus
41 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 41.       of 2 | Next
Diploid oat - Diploid Oat, AFLP - Avena-Yu-D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xcdo545 locus 191.5 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo545 locus 16.2 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xcdo545 locus 11.4 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 Xcdo545 locus 69 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xcdo545 locus 49.3 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-7 Xcdo545 locus 19.9 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7A Xcdo545 locus 5 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xcdo545 locus 8 () Automated name-based View Maps
E16M11-7b locus 0 No other positions
Bare-E1-3b locus 18.6 No other positions
E1M6-6a locus 24.2 No other positions
E4M4-6a locus 29.8 No other positions
E1M6-4b locus 37.9 No other positions
E7M4-4a locus 42 No other positions
E13M15-2a locus 42 No other positions
Bare-M8-8a locus 47.5 No other positions
E4M4-3b locus 55.6 No other positions
Bare-E16-1a locus 58.5 No other positions
Xisu1946 locus 71.4 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-G ISU1946 locus 196.1 () Automated name-based View Maps
E3M5-13b locus 83.9 No other positions
E11M15-2b locus 101.8 No other positions
E5M6-3a locus 104.7 No other positions
E3M5-17b locus 105.6 No other positions
E1M4-9a locus 108 No other positions
E13M11-5b locus 108.6 No other positions
E13M12-6b locus 112.1 No other positions
E1M6-5b locus 115.1 No other positions
E9M4-7a locus 118.1 No other positions
E10M16-4a locus 122.4 No other positions
E16M9-3b locus 128 No other positions
E16M11-10a locus 157.4 No other positions
Bare-M13-5b locus 166.6 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.