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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, AFLP
(Reference Set)
Min.
Correspondences
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Maps Avena-Yu-G
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, AFLP [ View Map Set Info ]
Map Name: Avena-Yu-G
Map Start: 0
Map Stop: 580.9
Features by Type:
81 locus
81 Total

Map Features

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Items 1 to 25 of 81.       of 4 | Next
Diploid oat - Diploid Oat, AFLP - Avena-Yu-G
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
E3M1-2a locus 0 No other positions
Bare-M15-10a locus 18.1 No other positions
E14M11-5b locus 26.1 No other positions
E14M11-1a locus 26.1 No other positions
E3M12-3a locus 27.3 No other positions
Xisu1410a locus 35.9 Oat - Oat, X466-I x C237-89 - Oat, X466-I x C237-89 Xisu1410a locus 53.4 () Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-A Xisu1410a locus 502.7 () Automated name-based View Maps
Bare-M8-3b locus 30.5 No other positions
E4M11-2a locus 38.4 No other positions
RGA-LM2000 locus 51.1 No other positions
E4M11-10a locus 67.2 No other positions
E1M4-2a locus 69.1 No other positions
E3M2-5a locus 71 No other positions
E10M11-9a locus 71 No other positions
E4M11-4a locus 71.6 No other positions
E4M11-3b locus 71.6 No other positions
E9M11-6b locus 73.1 No other positions
E9M11-6a locus 72.5 No other positions
E10M11-10a locus 75.6 No other positions
E3M2-5b locus 79.5 No other positions
E10M11-2b locus 95 No other positions
E11M10-8b locus 99.5 No other positions
E10M11-8b locus 112 No other positions
E14M11-11a locus 113.8 No other positions
Bare-M15-1b locus 118.9 No other positions
Bare-M13-4a locus 130.2 No other positions

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