*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, Cornell2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Avena-Sorrells-A
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, Cornell2 [ View Map Set Info ]
Map Name: Avena-Sorrells-A
Map Start: -3
Map Stop: 117.9
Features by Type:
64 locus
64 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 64.       Previous | of 3 | Next
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbcd1340 locus 35.3 Oat - Oat, KxO - Oat-KxO-6 Xbcd1340 locus 12.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_6 BCD1340 locus 95 (cM) Automated name-based View Maps
Oat - Oat-1997-64Lines - Oat-1997-64Lines_6 Xbcd1340 locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-6 bcd1340 locus 89.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg12 BCD1340 locus 9.2 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_5 BCD1340 locus 130 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_6 Xbcd1340 locus 12.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_6 BCD1340 locus 12.5 (cM) Automated name-based View Maps
Oat - Oat-1997-64Lines - Oat-1997-64Lines_6 bcd1340 locus 0 (cM) Automated name-based View Maps
Xbcd1449 locus 50.6 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1B bcd1449 locus 59.93 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B bcd1449 locus 34.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xbcd1449 locus 50 () Automated name-based View Maps
Xbcd1700 locus 82.9 No other positions
Xbcd1964 locus 50.6 No other positions
Xcdo98 locus 48.8 Barley - Barley consensus 2003 - Barley-consensus-2003-1H CDO98 locus 36.9 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-1H CDO98 locus 154.38 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-10 CDO98 locus 26.4 () Automated name-based View Maps
Wheat ABD - Wheat.Rye recombinant - 1D.1R recombinants CDO98 locus -39.3 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A cdo98 locus 27.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xcdo98 locus 50 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B cdo98 locus 34.6 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-1 Xcdo98 locus 29 () Automated name-based View Maps
Xcdo109 locus 96.7 Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 CDO109 locus 160 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 CDO109 locus 67.7 () Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_19 cdo109 locus 26.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 Xcdo109 locus 160 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 cdo109 locus 24 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 Xcdo109 locus 160 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 Xcdo109 locus 24 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_19 Xcdo109 locus 26.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 cdo109 locus 73.6 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_break CDO109 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 CDO109 locus 160 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 CDO109 locus 67.7 () Automated name-based View Maps
Xcdo202 locus 84.3 No other positions
Xcdo216 locus 117.9 Rice - Rice, BxOl - Rice-CU-4 CDO216 locus -3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 CDO216 locus 70 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-3 Xcdo216 locus -1 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 Xcdo216 locus 147.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 Xcdo216 locus 147.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_3-38 CDO216 locus 147.5 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_break CDO216 locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 CDO216 locus 73.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 CDO216 locus 70 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_3-38 CDO216 locus 147.5 (cM) Automated name-based View Maps
Xcdo270 locus 96.7 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B Xcdo270 locus 91 () Automated name-based View Maps
Xcdo312 locus 52.8 Rice - Rice, BxOl - Rice-CU-5 CDO312 locus 87 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xcdo312 locus 57 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xcdo312 locus 24.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A cdo312 locus 38.4 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D cdo312 locus 43.3 () Automated name-based View Maps
Xcdo346 locus 78.3 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B cdo346 locus 88.4 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-5 CDO346 locus 133 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D cdo346 locus 78.9 () Automated name-based View Maps
Xcdo353A locus 35.3 Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_3 cdo353 locus 73 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 Xcdo353A locus 47.5 (cM) Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-3 CDO353 locus 118.9 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-24 Xcdo353A locus 5.4 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 Xcdo353A locus 48.71 (cM) Automated name-based View Maps
Xcdo393 locus 86.9 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-1A Xcdo393 locus 98 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-1 Xcdo393 locus 103 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xcdo393 locus 72 () Automated name-based View Maps
Wheat A - T. monococcum, G1777 x G2528 - Tm-Dubcovsky-1A Xcdo393 locus 64.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xcdo393 locus 97 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xcdo393 locus 132 () Automated name-based View Maps
Xcdo426A locus 48.8 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A cdo426 locus 22.2 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1A cdo426 locus 44.92 (cM) Automated name-based View Maps
Xcdo442A locus 61.5 No other positions
Xcdo476 locus 96.7 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A cdo476 locus 5.3 () Automated name-based View Maps
Xcdo564 locus 51.2 Oat - Oat-2001-KxO - Oat-2001-KxO_5 CDO564 locus 7.5 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_5 Xcdo564 locus 7.5 (cM) Automated name-based View Maps
Xcdo590 locus 56.3 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 Xcdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 cdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_9 cdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 cdo590 locus 0 (cM) Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-9 CDO590 locus 18.5 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 cdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 Xcdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_16 cdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_9 Xcdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 cdo590 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_16 Xcdo590 locus 0 (cM) Automated name-based View Maps
Xcdo598 locus 50.6 No other positions
Xcdo718 locus 23.5 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xcdo718 locus 4.5 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3B Xcdo718 locus 58 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xcdo718 locus 3.1 () Automated name-based View Maps
Xcdo949 locus 51.7 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 CDO949 locus 110.8 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_32 Xcdo949 locus 95.5 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 cdo949 locus 101.9 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-5 cdo949 locus 15.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 CDO949 locus 110.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D Xcdo949 locus 107 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 CDO949 locus 5 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 CDO949 locus 83.7 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 CDO949 locus 110.8 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Xcdo949 locus 83.7 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-5 Xcdo949 locus 9.4 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 4D cdo949 locus 77.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xcdo949 locus 57 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_5 Xcdo949 locus 13.75 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_5 CDO949 locus 13.75 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_32 cdo949 locus 95.5 (cM) Automated name-based View Maps
Xcdo1173.1 locus 47 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 cdo1173 locus 82 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO1173 locus 127.4 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1B cdo1173 locus 59.62 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B cdo1173 locus 34.6 () Automated name-based View Maps
Wheat ABD - Wheat.Rye recombinant - 1D.1R recombinants CDO1173 locus 25.5 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 cdo1173 locus 82 (cM) Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-5 CDO1173 locus 23.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO1173 locus 127.4 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_9 cdo1173 locus 82 (cM) Automated name-based View Maps
Diploid oat - Oat-2006-LAG211 - Oat-2006-LAG211_10 cdo1173 locus 18 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-4 CDO1173 locus 60.8 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 cdo1173 locus 82 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_16 cdo1173 locus 82 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 cdo1173 locus 82 (cM) Automated name-based View Maps
Xcdo1173.2 locus 96.7 No other positions
Xcdo1423 locus 0 No other positions
Xcdo1473 locus -3 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.