*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, Cornell2
(Reference Set)
Oat-Oat-2009-KxO
Min.
Correspondences
Align Vertically
Stack
Maps Avena-Sorrells-D Oat-2009-KxO_2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, Cornell2 [ View Map Set Info ]
Map Name: Avena-Sorrells-D
Map Start: 0.00
Map Stop: 104.70
Features by Type:
50 locus
50 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 50.       of 2 | Next
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xcdo545 locus 16.20 Oat - Oat, KxO - Oat-KxO-17 Xcdo545 locus 49.30 () Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-D Xcdo545 locus 191.50 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7A Xcdo545 locus 5.00 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xcdo545 locus 8.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xcdo545 locus 11.40 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-7 Xcdo545 locus 19.90 () Automated name-based View Maps
XksuE19 locus 67.10 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B XksuE19 locus 37.00 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD XksuE19 locus -86.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D XksuE19 locus -2.59 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-1D XksuE19 locus 8.55 () Automated name-based View Maps
Xcdo1466 locus 30.20 Oat - Oat, KxO - Oat-KxO-2 Xcdo1466 locus 0.00 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-2 Xcdo1466 locus 0.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO1466 locus 139.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO1466 locus 139.40 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 CDO1466 locus 17.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 CDO1466 locus 147.30 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-2 Xcdo1466 locus 36.00 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-9 cdo1466 locus 12.30 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 cdo1466 locus 5.28 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 CDO1466 locus 147.30 () Automated name-based View Maps
Xbcd1779 locus 42.20 Oat - Oat-2009-KxO - Oat-2009-KxO_2 BCD1779 locus 60.00 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-2 Xbcd1779 locus 120.00 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2B bcd1779 locus 61.70 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-2 Xbcd1779 locus 46.10 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 BCD1779 locus 82.40 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2B Xbcd1779 locus 88.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 BCD1779 locus 82.40 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-2 Xbcd1779 locus 46.10 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 bcd1779 locus 37.40 () Automated name-based View Maps
Xcdo595 locus 34.10 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xcdo595 locus 46.00 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xcdo595 locus 69.80 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-6 Xcdo595 locus 84.50 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xcdo595 locus 68.00 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-6-37 Xcdo595 locus 96.00 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xcdo595 locus 24.00 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-6 Xcdo595 locus 84.50 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7A Xcdo595 locus 103.00 () Automated name-based View Maps
Xcdo585B locus 94.50 Oat - Oat, KxO - Oat-KxO-13 Xcdo585B locus 65.90 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-13 Xcdo585B locus 61.00 () Automated name-based View Maps
Oat - Oat-1996-KxO - Oat-1996-KxO_13 Xcdo585B locus 65.90 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-13 Xcdo585B locus 65.90 () Automated name-based View Maps
Xcdo414 locus 83.70 Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 cdo414 locus 35.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO414 locus 16.20 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 7B cdo414 locus 72.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO414 locus 16.20 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xcdo414 locus 102.00 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 CDO414 locus 67.00 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xcdo414 locus 50.30 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 Xcdo414 locus 83.00 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-17 Xcdo414 locus 50.30 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 CDO414 locus 11.40 () Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-6 cdo414 locus 146.40 () Automated name-based View Maps
Xbcd421A locus 34.10 Oat - Oat, KxO - Oat-KxO-20 Xbcd421A locus 0.00 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xbcd421A locus 0.00 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xbcd421A locus 0.00 () Automated name-based View Maps
Xcdo1428A locus 34.10 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-20 Xcdo1428A locus 34.00 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6A cdo1428 locus 31.00 () Automated name-based View Maps
Diploid oat - Oat-2006-LAG211 - Oat-2006-LAG211_4 cdo1428 locus 4.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xcdo1428A locus 17.50 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-20 Xcdo1428A locus 17.50 () Automated name-based View Maps
Xbcd147 locus 33.50 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xbcd147 locus 14.10 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-6 Xbcd147 locus 73.30 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3B Xbcd147 locus 63.00 () Automated name-based View Maps
Xbcd98B locus 21.80 No other positions
Xbcd149 locus 31.30 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg08 BCD149 locus 142.00 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-9 bcd149 locus 13.90 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-8 BCD149 locus 142.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-2 Xbcd149 locus 1.60 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_2 BCD149 locus 19.00 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-2 bcd149 locus 4.06 () Automated name-based View Maps
Xbcd539 locus 34.10 No other positions
Xbcd782 locus 34.60 Oat - Oat, KxO - Oat-KxO-21 Xbcd782 locus 2.50 () Automated name-based View Maps
Xbcd938 locus 34.60 No other positions
Xbcd1059 locus 32.40 No other positions
Xbcd1226 locus 36.70 No other positions
Xbcd1280 locus 86.00 No other positions
Xbcd1311 locus 33.50 Oat - Oat-2009-KxO - Oat-2009-KxO_6 BCD1311 locus 28.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 BCD1311 locus 61.60 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_5 BCD1311 locus 22.30 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg12 BCD1311 locus 61.60 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-6 Xbcd1311 locus 88.90 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-6 bcd1311 locus 24.20 () Automated name-based View Maps
Xbcd1355A locus 34.60 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5A bcd1355 locus 28.40 () Automated name-based View Maps
Xbcd1502 locus 34.60 Oat - Oat-2009-KxO - Oat-2009-KxO_11_41_20_45 BCD1502 locus 70.00 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-20 Xbcd1502 locus 11.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-5 BCD1502 locus 79.50 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_9 BCD1502 locus 80.30 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-D BCD1502 locus 306.90 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-11_41+20 BCD1502 locus 61.80 () Automated name-based View Maps
Xbcd1872 locus 10.60 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7D Xbcd1872 locus 47.00 () Automated name-based View Maps
Xcdo17 locus 30.20 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7A Xcdo17 locus 107.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xcdo17 locus 47.00 () Automated name-based View Maps
Xcdo78 locus 36.70 Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xcdo78 locus 54.40 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-9 CDO78 locus 42.30 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-6 CDO78 locus 87.40 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-2 Xcdo78 locus 56.20 () Automated name-based View Maps
Xcdo89 locus 104.70 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xcdo89 locus 91.00 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-5 CDO89 locus 82.00 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D cdo89 locus 29.40 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D Xcdo89 locus 49.00 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 CDO89 locus 40.30 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A cdo89 locus 57.60 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 CDO89 locus 40.30 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-3 CDO89 locus 0.00 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-6 CDO89 locus 122.35 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.