*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, Cornell2
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Avena-Sorrells-E
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, Cornell2 [ View Map Set Info ]
Map Name: Avena-Sorrells-E
Map Start: -3
Map Stop: 118.8
Features by Type:
65 locus
65 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 65.       Previous | of 3 | Next
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbcd1413 locus 20.7 Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 BCD1413 locus 83 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 BCD1413 locus 14.7 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_30 BCD1413 locus 2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 BCD1413 locus 131 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 Xbcd1413 locus 23.75 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 Xbcd1413 locus 15.53 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-E BCD1413 locus 226.5 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 BCD1413 locus 23.75 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO24_26_34 bcd1413 locus 15.53 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 BCD1413 locus 14.7 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-26 Xbcd1413 locus 9.1 () Automated name-based View Maps
Xbcd1421 locus 74.9 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5D Xbcd1421 locus 97 () Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5D bcd1421 locus 174.82 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D bcd1421 locus 93.2 () Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-7 Xbcd1421 locus 47 () Automated name-based View Maps
Xbcd1427 locus 50.8 No other positions
Xbcd1549.1 locus 10.4 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-B BCD1549 locus 63.5 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF bcd1549 locus 17 (cM) Automated name-based View Maps
Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF bcd1549 locus 20 (cM) Automated name-based View Maps
Xbcd1549.2 locus 82.4 No other positions
Xbcd1588 locus 24.7 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 BCD1588 locus 13 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 bcd1588 locus 174 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-22 Xbcd1588 locus 5.1 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 Xbcd1588 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 BCD1588 locus 158 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 BCD1588 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 BCD1588 locus 15.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 BCD1588 locus 13 () Automated name-based View Maps
Xbcd1643 locus 43.7 No other positions
Xbcd1670 locus 65.2 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5D bcd1670 locus 87.6 () Automated name-based View Maps
Xbcd1727 locus 78.7 No other positions
Xbcd1802 locus 74.9 Oat - Oat-2009-KxO - Oat-2009-KxO_6 BCD1802 locus 28 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-6 Xbcd1802 locus 92.8 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_6 Xbcd1802 locus 76.25 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_6 BCD1802 locus 76.25 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-6 Xbcd1802 locus 92.8 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_6 BCD1802 locus 76.25 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg12 BCD1802 locus 65.9 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-6 bcd1802 locus 24.4 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_5 BCD1802 locus 14.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D Xbcd1802 locus 27 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_6 Xbcd1802 locus 76.25 (cM) Automated name-based View Maps
Xbcd1829B locus 24.7 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_20 Xbcd1829B locus 49 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-37 Xbcd1829B locus 0 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_37 Xbcd1829B locus 0 (cM) Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_37 Xbcd1829B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_20 Xbcd1829B locus 49 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_13 Xbcd1829B locus 11 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-37 Xbcd1829B locus 0 () Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_6 Xbcd1829B locus 48.2 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_6 Xbcd1829B locus 49 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_6 Xbcd1829B locus 49 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_27 Xbcd1829B locus 49 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_13 Xbcd1829B locus 49 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_37 Xbcd1829B locus 0 (cM) Automated name-based View Maps
Xbcd1965 locus 20.7 Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 BCD1965 locus 18.75 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 BCD1965 locus 14.7 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 bcd1965 locus 130 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 Xbcd1965 locus 18.75 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-26 Xbcd1965 locus 17.2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 BCD1965 locus 83 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 BCD1965 locus 14.7 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_30 BCD1965 locus 0 () Automated name-based View Maps
Xcdo36B locus 30 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_34 Xcdo36B locus 21.5 (cM) Automated name-based View Maps
Xcdo87 locus 53.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO87 locus 141 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-3 CDO87 locus 134.6 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF cdo87 locus 92 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO87 locus 141 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 cdo87 locus 29.5 (cM) Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 Xcdo87 locus 29.5 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-1 CDO87 locus 30.1 () Automated name-based View Maps
Maize - Maize, TxCM - Zea-Ahn-5 CDO87 locus 15.55 () Automated name-based View Maps
Xcdo212 locus 91.4 No other positions
Xcdo241.1 locus 39.1 No other positions
Xcdo241.2 locus 57.9 No other positions
Xcdo337 locus 39.1 Rice - Rice, BxOl - Rice-CU-3 CDO337 locus 96.2 () Automated name-based View Maps
Xcdo442B locus 10.4 No other positions
Xcdo457 locus 61.4 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xcdo457 locus 87 () Automated name-based View Maps
Xcdo465 locus 48.6 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo465 locus 66.4 () Automated name-based View Maps
Xcdo504 locus 46.3 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xcdo504 locus 97 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo504 locus 67.1 () Automated name-based View Maps
Xcdo669 locus 37.1 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D Xcdo669 locus 49 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Xcdo669 locus -25.9 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 Xcdo669 locus 6 (cM) Automated name-based View Maps
Xcdo735 locus 86.3 No other positions
Xcdo758 locus 24.7 Oat - Oat, KxO - Oat-KxO-26 Xcdo758 locus 23 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 CDO758 locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 cdo758 locus 122 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 Xcdo758 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO758 locus 14.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 CDO758 locus 74 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO758 locus 14.7 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.