*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, Iowa St.
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Avena-Wise-G
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, Iowa St. [ View Map Set Info ]
Map Name: Avena-Wise-G
Map Start: 0
Map Stop: 244.2
Features by Type:
23 locus
23 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 23 of 23.
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-G
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
isu2124 locus 157.8 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-9 isu2124 locus 130.3 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 isu2124 locus 22 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 isu2124 locus 22 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 isu2124 locus 22 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 isu2124 locus 22 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_8 isu2124 locus 20.6 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 isu2124 locus 22 (cM) Automated name-based View Maps
CDO1495 locus 92 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1495 locus 51.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 CDO1495 locus 22 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xcdo1495 locus 33.3 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 CDO1495 locus 25.1 () Automated name-based View Maps
ISU0536 locus 167.9 No other positions
ISU1255 locus 209 No other positions
ISU1294 locus 152.9 No other positions
ISU1313 locus 226.7 No other positions
ISU1314 locus 244.2 No other positions
ISU1315 locus 29.4 No other positions
ISU1330 locus 177 Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswG isu1330 locus 55 (cM) Automated name-based View Maps
ISU1372 locus 143.1 Oat - Oat, KxO - Oat-KxO-6 Xisu1372A locus 18.2 () Automated name-based View Maps
ISU1463 locus 51.9 Oat - Oat-2001-KxO - Oat-2001-KxO_24-26-34 ISU1463 locus 128.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-24_26_34 ISU1463 locus 8.13 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg21 ISU1463 locus 196.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_24_26_34 ISU1463 locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-34 Xisu1463 locus 2.3 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_3 ISU1463 locus 199.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-21 ISU1463 locus 196.4 () Automated name-based View Maps
ISU1490 locus 188.2 No other positions
ISU1543 locus 238.6 Oat - Oat, KxO - Oat-KxO-20 Xisu1543 locus 35.5 () Automated name-based View Maps
ISU1600 locus 78.2 Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswG isu1600 locus 22 (cM) Automated name-based View Maps
ISU1657 locus 124.9 No other positions
ISU1683 locus 165.9 No other positions
ISU1874 locus 0 Oat - Oat, KxO - Oat-KxO-34 Xisu1874 locus 0 () Automated name-based View Maps
ISU1900 locus 2.2 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_27 isu1900 locus 26 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xisu1900A locus 61 () Automated name-based View Maps
ISU1946 locus 196.1 Diploid oat - Diploid Oat, AFLP - Avena-Yu-D Xisu1946 locus 71.4 () Automated name-based View Maps
ISU1954 locus 2.2 No other positions
ISU1966 locus 106.6 Oat - Oat, KxO - Oat-KxO-3 Xisu1966 locus 19 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_X2 ISU1966 locus 17 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 ISU1966 locus 25.4 () Automated name-based View Maps
ISU2013 locus 54.4 Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 ISU2013 locus 35.2 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xisu2013 locus 83.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 ISU2013 locus 38.2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 ISU2013 locus 67 (cM) Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_17 ISU2013 locus 83.7 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 ISU2013 locus 38.2 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_17 ISU2013 locus 45.5 (cM) Automated name-based View Maps
ISU2244 locus 152.9 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.