*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat AB-Durum wheat, Kofa x UC1113
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Kofa/UC1113-2B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat AB - Durum wheat, Kofa x UC1113 [ View Map Set Info ]
Map Name: Kofa/UC1113-2B
Map Start: 0.00
Map Stop: 103.70
Features by Type:
12 locus
1 qtl
13 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 13 of 13.
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-2B
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xgwm429-2B locus 21.40 Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-2B Xgwm429-2B locus 96.70 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2B Xgwm429-2B locus -0.26 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2B Xgwm429-2B locus 78.70 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-2B Xgwm429-2B locus -50.50 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2B Xgwm429-2B locus 14.90 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2B Xgwm429-2B locus 40.40 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2B Xgwm429-2B locus 94.10 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-2B Xgwm429-2B locus 82.50 () Automated name-based View Maps
Xwmc154-2B locus 0.00 Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-2B Xwmc154-2B locus 84.70 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2B Xwmc154-2B locus 28.50 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2B Xwmc154-2B locus 41.50 () Automated name-based View Maps
Xgwm410-2B locus 44.10 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2B Xgwm410-2B locus 82.90 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2B Xgwm410-2B locus 18.90 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2B Xgwm410-2B locus 44.20 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-2B Xgwm410-2B locus 73.80 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2B Xgwm410-2B locus -0.64 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-2B Xgwm410-2B locus 6.50 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2B Xgwm410-2B locus 48.70 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-2B Xgwm410-2B locus 97.60 () Automated name-based View Maps
Xbarc159-2B locus 103.70 Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-2B Xbarc159-2B locus 242.00 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2B Xbarc159-2B locus 109.00 () Automated name-based View Maps
Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-2B Xbarc159-2B locus 191.00 () Automated name-based View Maps
Xcfa2201-2B locus 17.30 No other positions
BQ168780_769-2B locus 23.70 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2B BQ168780_769 locus 28.10 () Automated name-based View Maps
Wheat AB - Wheat_AB_2015_Consensus - Wheat_AB_2015_Consensus-2B BQ168780_769-2B locus 54.90 () Automated name-based View Maps
Wheat AB - Wheat_AB, Kofa x UC1113 - Wheat_AB, Kofa x UC1113 2B_1 BQ168780_769-2B locus 2.30 () Automated name-based View Maps
Xwmc597-2B locus 23.70 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2B Xwmc597-2B locus 38.40 () Automated name-based View Maps
BM140538_39-2B locus 27.20 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2B BM140538_39 locus 28.20 () Automated name-based View Maps
Wheat AB - Wheat_AB_2015_Consensus - Wheat_AB_2015_Consensus-2B BM140538_39-2B locus 56.50 () Automated name-based View Maps
Wheat AB - Wheat_AB, Kofa x UC1113 - Wheat_AB, Kofa x UC1113 2B_1 BM140538_39-2B locus 5.20 () Automated name-based View Maps
Xcnl158-2B locus 37.70 Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 2B cnl158 locus 29.40 () Automated name-based View Maps
Xwmc35-2B locus 40.20 No other positions
Xwmc167-2B locus 96.10 No other positions
Xwmc361-2B locus 96.80 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-2B Xwmc361-2B locus 100.80 () Automated name-based View Maps
QTwt.ucw-2B qtl 0.00 - 21.40 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.