*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat AB-Durum wheat, Kofa x UC1113
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Kofa/UC1113-5B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat AB - Durum wheat, Kofa x UC1113 [ View Map Set Info ]
Map Name: Kofa/UC1113-5B
Map Start: 0
Map Stop: 180.5
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Wheat AB - Durum wheat, Kofa x UC1113 - Kofa/UC1113-5B
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xgwm234-5B locus 0 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm234-5B locus 38.1 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1, 2 - Tturgidum-JKxC2-5B Xgwm234-5B locus 91.6 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5B Xgwm234-5B locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xgwm234-5B locus 1.8 () Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-5B Xgwm234-5B locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-5B Xgwm234-5B locus 6.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xgwm234-5B locus -0.76 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-5B Xgwm234-5B locus 57.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5B Xgwm234-5B locus 1 () Automated name-based View Maps
Wheat AB - T. turgidum, JK x Cham1 - Tturgidum-JKxC-5B Xgwm234-5B locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5B Xgwm234-5B locus -5 () Automated name-based View Maps
Xbarc74-5B locus 41.2 Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B Xbarc74-5B locus 40 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xbarc74-5B locus 0.42 () Automated name-based View Maps
Wheat ABD - Wheat, Grandin x BR34 - Ta-Grandin/BR34-5B Xbarc74-5B locus 65.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xbarc74-5B locus 33.1 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-5B Xbarc74-5B locus 71.19 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-5B Xbarc74-5B locus 56.7 () Automated name-based View Maps
Xgwm499-5B locus 66.5 Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5B Xgwm499-5B locus 32.9 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xgwm499-5B locus 0.65 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5B Xgwm499-5B locus 65.7 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm499-5B locus 75.1 () Automated name-based View Maps
Wheat ABD - Wheat_Yr79_2018 - Wheat_Yr79_2018-5BS Xgwm499-5B locus 61.4 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-5B Xgwm499-5B locus 43.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xgwm499-5B locus 45.6 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-5B Xgwm499-5B locus 75.7 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-5B Xgwm499-5B locus 109.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5B Xgwm499-5B locus 47 () Automated name-based View Maps
Xgwm408-5B locus 100.3 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5B Xgwm408-5B locus 95.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5B Xgwm408-5B locus 111 () Automated name-based View Maps
Wheat ABD - Wheat, USG3209 x Jaypee - USG3209/Jaypee-5B Xgwm408-5B locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm408-5B locus 117.2 () Automated name-based View Maps
Wheat ABD - Wheat, Chinese Spring x SQ1 - CS/SQ1-5B Xgwm408-5B locus 133.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xgwm408-5B locus 89.2 () Automated name-based View Maps
Wheat ABD - 5BL, CS, 0.75-0.79 interval - 5BL, CS, 0.75-0.79 interval Xgwm408-5B locus 14.4 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5B Xgwm408-5B locus 87.5 () Automated name-based View Maps
Xgwm371-5B locus 51.1 Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5B Xgwm371-5B locus 46.9 () Automated name-based View Maps
Wheat ABD - Wheat, Conan x Reeder - Conan/Reeder-5B Xgwm371-5B locus 62.67 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xgwm371-5B locus 32.4 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm371-5B locus 72.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5B Xgwm371-5B locus 62.25 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xgwm371-5B locus 0.65 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B Xgwm371-5B locus 52.5 () Automated name-based View Maps
Xwmc149-5B locus 15.1 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xwmc149-5B locus 39.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5B Xwmc149-5B locus 12.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-5B Xwmc149-5B locus 11 () Automated name-based View Maps
Xgwm335-5B locus 41.2 Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-5B Xgwm335-5B locus 86 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-5B Xgwm335-5B locus 33 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5B Xgwm335-5B locus 36.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xgwm335-5B locus 0.42 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm335-5B locus 67.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xgwm335-5B locus 32.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5B Xgwm335-5B locus 37.2 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-5B Xgwm335-5B locus 90.6 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B Xgwm335-5B locus 42.4 () Automated name-based View Maps
Xbarc331-5B locus 53.2 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5B barc331 locus 100.54 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5B barc331 locus 42.4 () Automated name-based View Maps
Xdupw205-5B locus 54.5 No other positions
BE495277_339-5B locus 73.3 Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-5B BE495277_339-5B locus 115.95 (cM) Automated name-based View Maps
Wheat AB - Wheat AB, Carotenoid QTL, 2017 - Wheat_AB_2017_Carotenoid_QTL-5B BE495277_339 locus 93.5 () Automated name-based View Maps
Wheat AB - Wheat_AB_2015_Consensus - Wheat_AB_2015_Consensus-5B BE495277_339-5B locus 93.5 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 5B BE495277_339 locus 48.9 () Automated name-based View Maps
Wheat AB - Wheat_AB, Kofa x UC1113 - Wheat_AB, Kofa x UC1113 5B_1 BE495277_339-5B locus 51.2 () Automated name-based View Maps
Xbarc142-5B locus 121 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xbarc142-5B locus 106.3 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xbarc142-5B locus 129.6 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B Xbarc142-5B locus 118.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xbarc142-5B locus 0.78 () Automated name-based View Maps
Xwmc160-5B locus 129.2 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xwmc160-5B locus 133.1 () Automated name-based View Maps
Xbarc232-5B locus 129.9 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xbarc232-5B locus 108.7 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xbarc232-5B locus 133.6 () Automated name-based View Maps
Xwmc28-5B locus 145.1 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xwmc28-5B locus 139.4 () Automated name-based View Maps
CD373602_310-5B locus 168.8 Wheat AB - Wheat_AB, Kofa x UC1113 - Wheat_AB, Kofa x UC1113 5B_3 CD373602_310-5B locus 0 () Automated name-based View Maps
Xgwm497-5B locus 173.2 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm497-5B locus 164.4 () Automated name-based View Maps
Xgwm118-5B locus 180.5 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B Xgwm118-5B locus 0.14 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5B Xgwm118-5B locus 151.6 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-5B Xgwm118-5B locus 63 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.