*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-H. bulbosum, PB1 x PB11
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hbulbosum-PB1xPB11-1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - H. bulbosum, PB1 x PB11 [ View Map Set Info ]
Map Name: Hbulbosum-PB1xPB11-1
Map Start: 0
Map Stop: 103
Features by Type:
22 locus
22 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 22 of 22.
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-1
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr121b locus 38 Wheat D - T.tauschii, Appels - Tt-Appels-7D Xpsr121b locus 12.05 () Automated name-based View Maps
Centromere-1H locus 38.5 Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-1H Centromere-1H locus 48.8 - 55.7 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-1H Centromere-1H locus 102.8 - 105.8 () Automated name-based View Maps
Barley - Barley, AxHs/QTL - Hordeum-Pillen-1H Centromere-1H locus 60 () Automated name-based View Maps
Barley - Barley, HxM/QTL - Hordeum-HxM-base-1H Centromere-1H locus 54 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-1H Centromere-1H locus 57 () Automated name-based View Maps
Xpsr158 locus 38 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr158 locus 76.5 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xpsr158 locus 0 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Xpsr158 locus 18.8 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xpsr158 locus 26.4 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xpsr158 locus 36 () Automated name-based View Maps
Wheat AB - 1BS, durum x dicoccoides - 1BS, durum x dicoccoides Xpsr158 locus 7.6 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr158 locus 1.1 () Automated name-based View Maps
Xpsr162 locus 41 Rye - Rye, UC90 x E-line - Secale-UxE-1 Xpsr162 locus 71.1 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-1R Xpsr162 locus 90.4 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xpsr162 locus 67 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xpsr162 locus 77 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-1 Xpsr162 locus 72.5 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xpsr162 locus 70.2 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Xpsr162 locus 26.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xpsr162 locus 81.4 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xpsr162 locus 36.2 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Xpsr162 locus 60.5 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xpsr162 locus 5.2 () Automated name-based View Maps
Xbcd98 locus 33 Wheat AB - 1BS, durum x dicoccoides - 1BS, durum x dicoccoides Xbcd98 locus 3.9 () Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xbcd98 locus -16.6 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xbcd98 locus -95 () Automated name-based, Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xbcd98 locus 81.2 () Automated name-based View Maps
Wheat ABD - Wheat, CS x CS-CNN DS1A - Ta-Dubcovsky-1A Xbcd98 locus -11 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xbcd98 locus -2.59 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xbcd98 locus 52.8 () Automated name-based View Maps
Diploid oat - Diploid Oat, AFLP - Avena-Yu-B Xbcd98 locus 82.2 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-1R Xbcd98 locus 40.1 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_8 Xbcd98 locus 108 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xbcd98 locus 43 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-1R Xbcd98 locus -27.5 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-1A Xbcd98 locus -23.3 () Automated name-based View Maps
Xbcd304 locus 49 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D Xbcd304 locus 4.46 () Automated name-based, Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xbcd304 locus 80.6 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xbcd304 locus 86 () Automated name-based, Automated name-based View Maps
Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xbcd304 locus 64.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xbcd304 locus 72 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Xbcd304 locus 80.4 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xbcd304 locus 92.8 () Automated name-based View Maps
Xbcd1072 locus 38 Wheat ABD - Triticum, CS-G1777 DS1A^m^(1A) RSL - TmTa-Dubcovsky-1A Xbcd1072 locus 0 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xbcd1072 locus 48.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xbcd1072 locus -51 () Automated name-based, Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xbcd1072 locus 36.7 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xbcd1072 locus 50.4 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_12 Xbcd1072 locus 31.5 (cM) Automated name-based View Maps
Xbcd1261 locus 70 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xbcd1261 locus 81.5 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-1A Xbcd1261 locus 66.6 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-1 Xbcd1261 locus 107.5 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xbcd1261 locus 118.1 () Automated name-based View Maps
Xcdo98 locus 29 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xcdo98 locus 48.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xcdo98 locus 50 () Automated name-based View Maps
Xcdo393 locus 103 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-1A Xcdo393 locus 98 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-A Xcdo393 locus 86.9 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1A Xcdo393 locus 132 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xcdo393 locus 72 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1ABD Xcdo393 locus 97 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, G1777 x G2528 - Tm-Dubcovsky-1A Xcdo393 locus 64.5 () Automated name-based View Maps
Xpsr13a locus 0 No other positions
Xpsr13c locus 19 No other positions
Xpsb167 locus 20 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Xpsb167 locus -35.7 () Automated name-based View Maps
Xpsr13b locus 25 No other positions
XzenL2 locus 26 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H XzenL2 locus -18.7 () Automated name-based View Maps
Xpsb95a locus 38 No other positions
XHvCO-6 locus 39 No other positions
Xpsb67 locus 42 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-1H Xpsb67 locus 45.2 () Automated name-based View Maps
Xcdo105b locus 44 No other positions
Xcmwg733b locus 47 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xcmwg733b locus 76 () Automated name-based View Maps
Xpsb95b locus 53 No other positions
Xcmwg733a locus 58 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xcmwg733a locus 44 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.