*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-H. bulbosum, PB1 x PB11
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hbulbosum-PB1xPB11-4
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - H. bulbosum, PB1 x PB11 [ View Map Set Info ]
Map Name: Hbulbosum-PB1xPB11-4
Map Start: 0
Map Stop: 99
Features by Type:
20 locus
20 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 20 of 20.
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-4
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Centromere-4H locus 68 Barley - Barley, KxM - Hordeum-KxM-4H Centromere-4H locus 81.6 - 84.1 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-4H Centromere-4H locus 51.9 - 54.1 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-4H Centromere-4H locus 62 () Automated name-based View Maps
Barley - Barley, AxHs/QTL - Hordeum-Pillen-4H Centromere-4H locus 38 () Automated name-based View Maps
Barley - Barley, HxM/QTL - Hordeum-HxM-base-4H Centromere-4H locus 65 () Automated name-based View Maps
Xpsr104 locus 69 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xpsr104 locus 44 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-7R Xpsr104 locus 71.8 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-7 Xpsr104 locus 6.9 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-7R Xpsr104 locus 0 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-7R Xpsr104 locus 13.8 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Xpsr104 locus 18.1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xpsr104 locus 2.73 () Automated name-based, Automated name-based View Maps
HVM68 locus 69 Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-4H HVM68 locus 62.52 () Automated name-based View Maps
Barley - Barley, LxHs - Hordeum-LxHs-4H HVM68 locus 45 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-4H HVM68 locus 76.2 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-4 HVM68 locus 56.94 () Automated name-based View Maps
Barley - Barley, Cali-sib x BowmanBC, QTL - Hordeum-CxB-4H HVM68 locus 46.2 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-4H HVM68 locus 56.94 () Automated name-based View Maps
Barley - Barley, Zhedar2, FHB QTL - Hordeum-Zhedar2-FHB-QTL-4H HVM68 locus 89.9 () Automated name-based View Maps
Barley - Barley, HxM/QTL - Hordeum-HxM-base-4H HVM68 locus 76.9 () Automated name-based View Maps
Barley - Barley, FxS, FHB QTL - Hordeum-FxS-FHB-QTL-4H HVM68 locus 152.8 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-4H HVM68 locus 61.72 () Automated name-based View Maps
Barley - Barley, HN x H602, Sato2009 - Hv-HNxH602-4H HVM68 locus 138.1 () Automated name-based View Maps
Barley - Barley, Lina x H.spont, SNP - Hordeum-LiHs-SNP-4H HVM68 locus 47.36 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-4H HVM68 locus 79.8 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-4H HVM68 locus 62.52 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-4H HVM68 locus 65.5 () Automated name-based View Maps
Barley - Barley, AxHs/QTL - Hordeum-Pillen-4H HVM68 locus 45 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-4H HVM68 locus 56.94 () Automated name-based View Maps
Barley - Barley, B73xCPI - Barley, B73xCPI-4H HVM0068 locus 70.1 () Automated name-based View Maps
Xcdo1387 locus 69 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D Xcdo1387 locus 2.73 () Automated name-based, Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo1387 locus 59.8 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xcdo1387 locus 50 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4A Xcdo1387 locus 34 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A Xcdo1387 locus 0.7 () Automated name-based View Maps
Xpsb43 locus 75 Rye - Rye, P87 x P105 - Secale-PxP-5 Xpsb43 locus 97.3 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsb43 locus 83.5 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-5R Xpsb43 locus 159.9 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Xpsb43 locus 72.2 () Automated name-based View Maps
Xwg222 locus 67 Rye - Rye_2009_consensus - Rye-2009-Consensus-3R Xwg222 locus 69 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-3 Xwg222 locus 72.9 () Automated name-based View Maps
Xcdo669A locus 50 Oat - Oat-2014-AB_QTL_KxO - Oat-2014-KxO_36 Xcdo669A locus 27 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-36 Xcdo669A locus 37.4 () Automated name-based View Maps
Xpsb56b locus 0 No other positions
Xwg622b locus 23 No other positions
Xwg622a locus 26 No other positions
Xcdo699b locus 62 No other positions
Xrgr411b locus 64 No other positions
Xmwg58 locus 70 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4A Xmwg58 locus 32 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Xmwg58 locus 17.1 () Automated name-based View Maps
Xmwg42 locus 71 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Xmwg42 locus 66.8 () Automated name-based View Maps
Xwg180a locus 71 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xwg180a locus 40 () Automated name-based View Maps
XzenC6 locus 77 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H XzenC6 locus 80.8 () Automated name-based View Maps
Xpsb32 locus 78 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Xpsb32 locus 82 () Automated name-based View Maps
Xmwg616 locus 80 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-4H Xmwg616 locus 88 () Automated name-based View Maps
Xbcd221e locus 82 No other positions
Xcdo105c locus 99 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.