*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-H. bulbosum, PB1 x PB11
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hbulbosum-PB1xPB11-6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - H. bulbosum, PB1 x PB11 [ View Map Set Info ]
Map Name: Hbulbosum-PB1xPB11-6
Map Start: 0.00
Map Stop: 95.00
Features by Type:
16 locus
16 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 16 of 16.
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-6
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr154 locus 75.00 Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr154 locus 16.50 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H Xpsr154 locus 72.80 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD Xpsr154 locus 95.00 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D Xpsr154 locus 3.46 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr154 locus 27.90 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr154 locus 85.60 () Automated name-based View Maps
Wheat D - T.tauschii, Appels - Tt-Appels-6D Xpsr154 locus 25.30 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr154 locus 61.40 () Automated name-based View Maps
Centromere-6H locus 67.00 Barley - Barley, Steptoe x Morex, SSAP - Hordeum-SxM-SSAP-6H Centromere-6H locus 71.40 - 75.10 () Automated name-based View Maps
Barley - Barley, HxM/QTL - Hordeum-HxM-base-6H Centromere-6H locus 45.00 () Automated name-based View Maps
Barley - Barley, KxM - Hordeum-KxM-6H Centromere-6H locus 99.20 - 105.10 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-6H Centromere-6H locus 83.00 () Automated name-based View Maps
Xbcd348 locus 65.00 Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-2A Xbcd348 locus -72.20 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xbcd348 locus 5.80 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xbcd348 locus -3.08 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xbcd348 locus -92.00 () Automated name-based, Automated name-based View Maps
Xcdo497 locus 66.00 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xcdo497 locus 87.00 () Automated name-based View Maps
Xmwg652 locus 48.00 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xmwg652 locus 43.00 () Automated name-based View Maps
Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H Xmwg652 locus -36.50 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xmwg652 locus -24.00 () Automated name-based View Maps
Xpsr167b locus 0.00 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H Xpsr167b locus -5.90 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B Xpsr167b locus 124.00 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xpsr167b locus 10.00 () Automated name-based View Maps
Xpsr167a locus 7.00 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H Xpsr167a locus -52.80 () Automated name-based View Maps
Xpsr466a locus 24.00 No other positions
Xpsr8 locus 42.00 No other positions
XzenC61 locus 60.00 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H XzenC61 locus -15.90 () Automated name-based View Maps
Xpsb84 locus 66.00 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-6H Xpsb84 locus 7.90 () Automated name-based View Maps
Xbcd221a locus 68.00 No other positions
Xwg180b locus 69.00 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xwg180b locus 60.00 () Automated name-based View Maps
Xcdo465b locus 72.00 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5B Xcdo465b locus 99.00 () Automated name-based View Maps
Xmwg897 locus 89.00 Barley - Barley, BinMap 2005 - Hordeum-Bins-6H MWG897 locus 144.00 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-6H MWG897 locus 118.40 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-6H MWG897 locus 126.00 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-6H MWG897 locus 67.90 () Automated name-based View Maps
Barley - Barley, IxF - Hordeum-Graner2-6H MWG897 locus 123.50 () Automated name-based View Maps
Barley - Barley, L94 x Vada, 2006 - Hv-L94/Vada-2006-6H MWG897 locus 129.02 () Automated name-based View Maps
Barley - Barley, HN x H602, Sato2009 - Hv-HNxH602-6H MWG897 locus 204.70 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-6H MWG897 locus 145.21 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-6H MWG897 locus 126.87 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-6H MWG897 locus 127.10 () Automated name-based View Maps
Xbcd221b locus 95.00 Barley - Barley, IxT/QTL - Hordeum-IxT/Q-2H Xbcd221b locus -33.60 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.