*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Maize-Maize, TxCM
(Reference Set)
Barley-Barley, GxH
Min.
Correspondences
Align Vertically
Stack
Maps Zea-Ahn-5 Hordeum-GxH-3H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
chromband
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Maize - Maize, TxCM [ View Map Set Info ]
Map Name: Zea-Ahn-5
Map Start: 0.00
Map Stop: 242.90
Features by Type:
28 locus
28 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 28.       of 2 | Next
Maize - Maize, TxCM - Zea-Ahn-5
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
cdo718 locus 127.05 Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-6 cdo718 locus 78.90 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-3H cdo718 locus 103.34 () Automated name-based View Maps
Wheat ABD - 3B Physical - Physical-3B cdo718 locus 68.30 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-2 cdo718 locus 104.70 () Automated name-based View Maps
Wheat ABD - Wheat, CIMMYT Integrated - CIMMYT-integrated-3B cdo718 locus 58.39 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-3H cdo718 locus 71.30 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 3B cdo718 locus 51.10 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-3H cdo718 locus 102.00 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-3H cdo718 locus 62.30 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-3H cdo718 locus 27.80 () Automated name-based View Maps
CDO457a locus 0.00 Oat - Oat-2009-KxO - Oat-2009-KxO_7_10_28 CDO457A locus 142.00 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-9 CDO457A locus 116.40 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg09 CDO457A locus 116.40 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-7_10_28 CDO457a locus 158.00 () Automated name-based View Maps
BNL8.29B locus 12.60 No other positions
CDO87 locus 15.55 Rice - Rice, BxOl - Rice-CU-3 CDO87 locus 134.60 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xcdo87 locus 53.10 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-1 CDO87 locus 30.10 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO87 locus 141.00 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO87 locus 141.00 () Automated name-based View Maps
BCD450a locus 32.65 No other positions
RZ630b locus 39.90 No other positions
RZ53a locus 45.10 No other positions
phy1 locus 49.05 Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H phy1 locus 96.05 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H phy1 locus 88.92 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H phy1 locus 95.30 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 phy1 locus 88.92 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H phy1 locus 88.92 () Automated name-based View Maps
CDO122b locus 52.40 No other positions
BCD1072b locus 61.00 Maize - Maize, TxCM - Zea-Ahn-10 BCD1072b locus 53.30 () Automated name-based View Maps
CDO94a locus 74.45 No other positions
RZ17b locus 75.50 No other positions
CDO98a locus 78.85 No other positions
CDO32b locus 95.15 No other positions
RZ87 locus 103.80 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xrz87 locus 68.90 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-2 RZ87 locus 145.60 () Automated name-based View Maps
amp3 locus 115.00 No other positions
RZ2c locus 123.70 No other positions
RZ166 locus 136.15 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H RZ166 locus 59.88 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 RZ166 locus 59.88 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H RZ166 locus 55.30 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H RZ166 locus 66.84 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B rz166 locus 28.80 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H RZ166 locus 59.88 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-2 RZ166 locus 77.40 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xrz166 locus 47.00 () Automated name-based View Maps
RZ467a locus 137.40 No other positions
CDO1380a locus 145.30 Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-5H CDO1380a locus 173.42 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-5H CDO1380a locus 176.90 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-5H CDO1380a locus 163.20 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 CDO1380A locus 23.10 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_26 CDO1380A locus 21.90 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-5H CDO1380a locus 173.42 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-5 CDO1380a locus 173.42 () Automated name-based View Maps
RZ86b locus 148.65 No other positions
CDO400a locus 153.20 Barley - Barley consensus 2003 - Barley-consensus-2003-1H CDO400a locus 114.00 () Automated name-based View Maps
CDO395b locus 155.40 Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_break CDO395B locus 2.00 (cM) Automated name-based View Maps
Oat - Oat-2004-TxM - Oat-2004-TxM_14 cdo395b locus 36.00 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-1 CDO395b locus 162.40 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 CDO395B locus 67.70 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-3+38 CDO395b locus 74.80 () Automated name-based View Maps
Oat - Oat-2002-KxO - Oat-2002-KxO_3_38 cdo395b locus 81.00 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 CDO395B locus 67.70 () Automated name-based View Maps
BNL5.40 locus 161.95 No other positions
RZ567a locus 178.20 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.