*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Maize-Maize, TxCM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Zea-Ahn-6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Maize - Maize, TxCM [ View Map Set Info ]
Map Name: Zea-Ahn-6
Map Start: 0
Map Stop: 186.6
Features by Type:
22 locus
22 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 22 of 22.
Maize - Maize, TxCM - Zea-Ahn-6
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
NOR locus 0 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-6B Xnor-6B (Nor) locus 37.2 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D NOR locus -2.28 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD NOR locus -53 () Automated name-based, Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-5D NOR locus 159.5 () Automated name-based View Maps
Barley - Barley, physical - Hordeum-Physical-RFLP-5H NOR locus 29 () Automated name-based View Maps
BNL6.29 locus 5.85 No other positions
BNL7.28 locus 9.2 No other positions
zp15 locus 12.55 No other positions
RZ2b locus 15.9 Oat - Oat, OxT - Oat-OxT-18 RZ2b locus 15.2 () Automated name-based View Maps
NPI98 locus 46.15 No other positions
NPI223 locus 55.25 No other positions
RZ588b locus 59.85 No other positions
RZ144b locus 68.5 No other positions
BNL3.03 locus 81.95 No other positions
me2 locus 90.35 No other positions
BCD454a locus 98 Rice - Rice, BxOl - Rice-CU-5 BCD454a locus 65.2 () Automated name-based View Maps
BNL5.47 locus 109.75 No other positions
RZ67a locus 116.25 No other positions
CDO312b locus 119.95 No other positions
CDO89 locus 122.35 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xcdo89 locus 104.7 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1D cdo89 locus 29.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-18 CDO89 locus 40.3 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1A cdo89 locus 57.6 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-5 CDO89 locus 82 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-3 CDO89 locus 0 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg18 CDO89 locus 40.3 () Automated name-based View Maps
BCD738a locus 128.25 No other positions
ATPase3 locus 155.9 No other positions
BNL17.12 locus 163.1 No other positions
idh2 locus 173.55 No other positions
CDO346b locus 179.35 Oat - Oat-2009-KxO - Oat-2009-KxO_1_3_38_X3 CDO346B locus 20 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-11 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-1 CDO346b locus 14.7 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO1 cdo346b locus 15 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-1 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg01 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 CDO346B locus 116.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-12 CDO346B locus 116.2 () Automated name-based View Maps
CDO202a locus 186.6 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.