*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2001-KxM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2001-KxM_14
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2001-KxM [ View Map Set Info ]
Map Name: Oat-2001-KxM_14
Map Start: 0
Map Stop: 91
Features by Type:
9 locus
9 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 9 of 9.
Oat - Oat-2001-KxM - Oat-2001-KxM_14
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
cdo64 locus 0 Barley - Barley, HxM/QTL - Hordeum-HxM-base-2H CDO64 locus 47.6 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-2H CDO64 locus 46 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-2H CDO64 locus 46 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 cdo64 locus 21.18 (cM) Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-2H CDO064 locus 42.71 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 CDO64 locus 22 (cM) Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-2H CDO64 locus 43.36 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO14 cdo64 locus 27 (cM) Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-2H CDO64 locus 49.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO64 locus 51.7 () Automated name-based View Maps
Barley - Barley, Dicktoo x Morex - Hordeum-DxM-2H CDO64 locus 39.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO64 locus 51.7 () Automated name-based View Maps
Wheat ABD - Wheat sprouting markers - Ta-Anderson-2 CDO64 locus 18.7 () Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 CDO64 locus 0 (cM) Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-2H CDO64 locus -22.7 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 CDO64 locus 26.7 () Automated name-based View Maps
bcd1729a locus 4 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 bcd1729a locus 4 (cM) Automated name-based View Maps
bcd1184 locus 12 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 BCD1184 locus 51.7 () Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 BCD1184 locus 12 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO14 bcd1184 locus 23 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 bcd1184 locus 23.1 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 bcd1184 locus 17.76 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 BCD1184 locus 22 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-C Xbcd1184 locus 12.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 BCD1184 locus 51.7 () Automated name-based View Maps
aaccat300 locus 12 No other positions
aaccat497 locus 12 No other positions
cdo400 locus 24 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_11 cdo400 locus 16 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO14 cdo400 locus 14.12 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO400 locus 58.9 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-1 cdo400 locus 144.18 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-23 cdo400 locus 0 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-1H cdo400 locus 144.18 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-2 cdo400 locus 68 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-5H cdo400 locus 117.92 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO14 cdo400 locus 19 (cM) Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-1H cdo400 locus 178.46 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_11 cdo400 locus 17.1 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO400 locus 58.9 () Automated name-based View Maps
Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 CDO400 locus 24 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_14 CDO400 locus 18 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-14 cdo400 locus 18.8 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-1H cdo400 locus 151.97 () Automated name-based View Maps
Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF cdo400 locus 131.79 (cM) Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-1H cdo400 locus 144.18 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-5H cdo400 locus 111.7 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF cdo400 locus 161 (cM) Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-1H CDO400a locus 114 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-1H cdo400 locus 230.98 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-1H cdo400 locus 152.7 () Automated name-based View Maps
Wheat D - T.tauschii - Tt-Gill-5D cdo400 locus 462.8 () Automated name-based View Maps
acacac247 locus 45 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 acacac247 locus 45 (cM) Automated name-based View Maps
cdo1358f locus 60 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 cdo1358f locus 60 (cM) Automated name-based View Maps
aaccac540 locus 91 Oat - Oat-2001-KxM-QTL - Oat-2001-KxM-QTL_14 aaccac540 locus 91 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.