*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2001-KxM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2001-KxM_27
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2001-KxM [ View Map Set Info ]
Map Name: Oat-2001-KxM_27
Map Start: 0
Map Stop: 11
Features by Type:
3 locus
3 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 3 of 3.
Oat - Oat-2001-KxM - Oat-2001-KxM_27
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
cdo1508a locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 CDO1508A locus 36.2 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_20 cdo1508a locus 30 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_27 CDO1508A locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-19+27 cdo1508a locus 33.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 CDO1508A locus 36.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-3 CDO1508A locus 24.6 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_19_25_27 CDO1508A locus 30 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO19_27 cdo1508a locus 33 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_27 CDO1508A locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_4b CDO1508A locus 124.1 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-20 cdo1508a locus 33 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg03 CDO1508A locus 24.6 () Automated name-based View Maps
acgcaa300 locus 0 No other positions
acgcac790 locus 11 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.