*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2001-KxO-QTL
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2001-KxO-QTL_17
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2001-KxO-QTL [ View Map Set Info ]
Map Name: Oat-2001-KxO-QTL_17
Map Start: 0 cM
Map Stop: 45.5 cM
Features by Type:
16 locus
2 qtl
18 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 18 of 18.
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_17
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CDO1238 locus 0 Oat - Oat, KxO - Oat-KxO-17 Xcdo1238 locus 0 () Automated name-based View Maps
Xcdo1238 locus 0 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 Xcdo1238 locus 0 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-17 Xcdo1238 locus 0 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xcdo1238 locus 0 () Automated name-based View Maps
ACOR221 locus 5 Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 acor221 locus 14.2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 ACOR221 locus 38 (cM) Automated name-based View Maps
Oat - Oat-2006-U8xP - Oat-2006-U8xP_1 acor221 locus 18 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xacor221 locus 5.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 ACOR221 locus 73.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 ACOR221 locus 73.3 () Automated name-based View Maps
Xacor221 locus 5 Oat - Oat, KxO - Oat-KxO-17 Xacor221 locus 5.3 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-17 Xacor221 locus 5.3 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 Xacor221 locus 0 () Automated name-based View Maps
CDO608B locus 10 Oat - Oat-2004-P48xP38 - Oat-2004-P48xP38_1 cdo608b locus 2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 cdo608b locus 5.28 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO608B locus 82.4 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 CDO608B locus 36 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO608B locus 82.4 () Automated name-based View Maps
Xcdo608B locus 10 Oat - Oat, KxO - Oat-KxO-17 Xcdo608B locus 17.3 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-G Xcdo608B locus 40.6 () Automated name-based View Maps
UMN441A locus 12 Oat - Oat-2009-KxO - Oat-2009-KxO_17 UMN441A locus 41 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 UMN441A locus 73.3 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 umn441a locus 7.94 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 UMN441A locus 73.3 () Automated name-based View Maps
Xumn441a locus 12 Oat - Oat, KxO - Oat-KxO-17 Xumn441A locus 18 () Automated name-based View Maps
CDO1340 locus 14 Oat - Oat-2004-P48xP38 - Oat-2004-P48xP38_1 cdo1340 locus 2 () Automated name-based View Maps
Oat - Oat-2010-MxN_PcQTL - Oat-2010-MxN_15 cdo1340 locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 cdo1340 locus 10.7 () Automated name-based View Maps
Oat - Oat, MxN, genetic 2005 - Oat-MxN_2005-15 cdo1340 locus 0 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO17 cdo1340 locus 11 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 1B cdo1340 locus 34.6 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 cdo1340 locus 23 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO1340 locus 118.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 CDO1340 locus 38 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xcdo1340 locus 20.2 () Automated name-based View Maps
Oat - Oat-2006-KxO-RGA - Oat-2006-KxO-RGA_KO17 cdo1340 locus 20.13 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr Update, 2021 - Wheat_Yr_2021-1B cdo1340 locus 59.62 (cM) Automated name-based View Maps
Oat - Oat-2013-MxN-RGA - Oat-2013-MxN-RGA_MN15 cdo1340 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO1340 locus 118.5 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO17 cdo1340 locus 35.65 (cM) Automated name-based View Maps
Xcdo1340 locus 14 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 Xcdo1340 locus 23 (cM) Automated name-based View Maps
Oat - Oat-2000-KxO-Bgl - Oat-2000-KxO-Bgl_17 Xcdo1340 locus 0 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO17 Xcdo1340 locus 35.65 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-17 Xcdo1340 locus 20.2 () Automated name-based View Maps
Oat - Oat-2006-KxO-RGA - Oat-2006-KxO-RGA_KO17 Xcdo1340 locus 20.13 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xcdo1340 locus 20.2 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1B Xcdo1340 locus 44 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 Xcdo1340 locus 16 () Automated name-based View Maps
PR_1waxy locus 27.25 No other positions
waxy locus 27.25 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 waxy locus 24.8 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 waxy locus 34.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 waxy locus 24.8 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 waxy locus 36 (cM) Automated name-based View Maps
ISU1254B locus 32.25 Oat - Oat-2016-KxO - Oat-2016-KxO_15 ISU1254B locus 9.2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 ISU1254B locus 67 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 ISU1254B locus 14.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 ISU1254B locus 14.4 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 isu1254b locus 36.6 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO17 isu1254b locus 4.71 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO17 isu1254b locus 37 (cM) Automated name-based View Maps
Xisu1254B locus 32.25 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 Xisu1254B locus 87 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO17 Xisu1254B locus 4.71 (cM) Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-17 Xisu1254B locus 53.4 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xisu1254B locus 53.4 () Automated name-based View Maps
ISU2013 locus 45.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 ISU2013 locus 38.2 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 ISU2013 locus 35.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 ISU2013 locus 38.2 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_17 ISU2013 locus 83.7 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-G ISU2013 locus 54.4 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xisu2013 locus 83.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 ISU2013 locus 67 (cM) Automated name-based View Maps
Xisu2013 locus 45.5 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 Xisu2013 locus 91 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-17 Xisu2013 locus 83.7 () Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_17 Xisu2013 locus 83.7 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xisu2013 locus 83.7 () Automated name-based View Maps
QKeA.2001-KxO_17 qtl 12 No other positions
QKeL.2001-KxO_17 qtl 12 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.