*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2002-OxT-QTL
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2002-OxT-QTL_32
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2002-OxT-QTL [ View Map Set Info ]
Map Name: Oat-2002-OxT-QTL_32
Map Start: 0 cM
Map Stop: 95.5 cM
Features by Type:
29 locus
4 qtl
33 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 33.       of 2 | Next
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_32
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
psr637 locus 0 Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 PSR637 locus 0 (cM) Automated name-based View Maps
Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-5 Xpsr637-5S locus 35.4 () Automated name-based View Maps
Oat - Oat-2006-OxT_Pc58 - Oat-2006-OxT_Pc58_1 PSR637 locus 59.4 (cM) Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H psr637 locus 158.23 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 PSR637 locus 10.8 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 psr637 locus 0 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H psr637 locus 104 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 PSR637 locus 10.8 () Automated name-based View Maps
Barley - Barley, Nure x Tremois - Hv-Nure/Tremois-5H PSR637 locus 104.2 () Automated name-based View Maps
Xpsr637 locus 0 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5D Xpsr637 locus 4.63 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Xpsr637 locus 0 (cM) Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-5 Xpsr637 locus 38.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-5A Xpsr637 locus 52 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-5R Xpsr637 locus 31.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xpsr637 locus 73 () Automated name-based View Maps
psr160b locus 4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 PSR160B locus 8.5 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 psr160b locus 4.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 PSR160B locus 8.5 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 PSR160B locus 4.3 (cM) Automated name-based View Maps
cdo545b locus 7 Oat - Oat, OxT - Oat-OxT-32 cdo545b locus 7.6 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 CDO545B locus 7.4 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO545B locus 17.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO545B locus 17.2 () Automated name-based View Maps
Xcdo545b locus 7 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xcdo545b locus 18 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Xcdo545b locus 7.4 (cM) Automated name-based View Maps
rz143a locus 29.5 Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 RZ143A locus 85.2 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 rz143a locus 30.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 RZ143A locus 85.2 () Automated name-based View Maps
adh2c locus 35.5 Oat - Oat, OxT - Oat-OxT-32 adh2c locus 37.6 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Adh2C locus 44.6 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 Adh2C locus 85.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 Adh2C locus 85.2 () Automated name-based View Maps
pgd2 locus 42.5 Oat - Oat, OxT - Oat-OxT-32 Pgd2 locus 45.8 () Automated name-based View Maps
Wheat ABD - Triticeae consensus - Triticeae-Sorrells-1 XPgd2 locus 92 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-1H Pgd2 locus 96 () Automated name-based View Maps
Barley - Barley, VGxTP - Hordeum-Giese2-1H Pgd2 locus 128 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Pgd2 locus 60.9 (cM) Automated name-based View Maps
Barley - Barley genes - Hordeum-Genes-1H Pgd2 locus -31.2 () Automated name-based View Maps
cdo1467a locus 47 Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_17 cdo1467a locus 13.9 (cM) Automated name-based View Maps
Oat - Oat-2004-P48xP38 - Oat-2004-P48xP38_1 cdo1467a locus 2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 CDO1467A locus 38 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO1467A locus 88 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 cdo1467a locus 50.9 () Automated name-based View Maps
Oat - Oat-2006-KxO-RGA - Oat-2006-KxO-RGA_KO17 cdo1467a locus 2.5 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO1467A locus 88 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO1467A locus 107.5 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 CDO1467A locus 61.7 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO17 cdo1467a locus 23.88 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 cdo1467a locus 6.91 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO1467A locus 107.5 () Automated name-based View Maps
Xcdo1467A locus 47 Oat - Oat-2006-KxO-RGA - Oat-2006-KxO-RGA_KO17 Xcdo1467A locus 2.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-17 Xcdo1467A locus 41 () Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO17 Xcdo1467A locus 23.88 (cM) Automated name-based View Maps
Oat - Oat-1997-KxO-QTL - Oat-1997-KxO-QTL_17 Xcdo1467A locus 13.9 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Xcdo1467A locus 61.7 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xcdo1467A locus 13.9 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-17 Xcdo1467A locus 13.9 () Automated name-based View Maps
rz508a locus 50 Oat - Oat, OxT - Oat-OxT-32 rz508a locus 53.8 () Automated name-based View Maps
rz516a locus 50 Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 RZ516A locus 62.8 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 RZ516A locus 87.3 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 RZ516A locus 87.3 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a RZ516A locus 9.9 () Automated name-based View Maps
umn97a locus 51 Oat - Oat, OxT - Oat-OxT-32 umn97a locus 54.5 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a UMN97A locus 9.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 UMN97A locus 87.3 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 UMN97A locus 38 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 UMN97A locus 87.3 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 umn97a locus 14.2 () Automated name-based View Maps
Xumn97A locus 51 Oat - Oat, KxO - Oat-KxO-17 Xumn97A locus 23.6 () Automated name-based View Maps
rz397 locus 52 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 RZ397 locus 87.3 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xrz397 locus 33.5 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-12 rz397 locus 75.1 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 RZ397 locus 87.3 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 rz397 locus 55.3 () Automated name-based View Maps
Xrz397 locus 52 Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-D Xrz397 locus 33.5 () Automated name-based View Maps
oisu1755b locus 53 Oat - Oat, OxT - Oat-OxT-32 oisu1755b locus 56.1 () Automated name-based View Maps
cdo78b locus 54.5 Oat - Oat, OxT - Oat-OxT-32 cdo78b locus 57.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 CDO78B locus 80.6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 CDO78B locus 80.6 () Automated name-based View Maps
e40m48-242.o locus 58 Oat - Oat, OxT - Oat-OxT-32 e40m48-242.o locus 61.8 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 e40m48-242.o locus 53.1 (cM) Automated name-based View Maps
aa04.360 locus 61.5 Oat - Oat, OxT - Oat-OxT-32 aa04.360 locus 65.6 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 aa04.360 locus 39.2 (cM) Automated name-based View Maps
aa17.350 locus 67 Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 aa17.350 locus 56.8 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 aa17.350 locus 71.4 () Automated name-based View Maps
acp2 locus 74 Rye - Rye, Hannover - Secale-Wricke-7R acp2 locus 55 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-7H acp2 locus 138 () Automated name-based View Maps
Barley - Barley, HxM/QTL - Hordeum-HxM-base-7H acp2 locus 130.7 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-7R acp2 locus 67.4 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 Acp2 locus 85.2 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Acp2 locus 68.7 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 Acp2 locus 85.2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 Acp2 locus 38 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 acp2 locus 79.1 () Automated name-based View Maps
rz682a locus 77.5 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 RZ682A locus 85.2 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a RZ682A locus 3.9 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 rz682a locus 82.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 RZ682A locus 85.2 () Automated name-based View Maps
bcd1280b locus 80 Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 BCD1280B locus 85.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_12 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 bcd1280b locus 85.4 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-17 bcd1280b locus 6.77 () Automated name-based View Maps
Oat - Oat-2016-OxT - Oat-2016-OxT_12a BCD1280B locus 2 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_5 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 BCD1280B locus 85.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_26 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_17 BCD1280B locus 30 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO17 bcd1280b locus 41.76 (cM) Automated name-based View Maps
Oat - Oat-2006-KxO-RGA - Oat-2006-KxO-RGA_KO17 bcd1280b locus 30 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 BCD1280B locus 65.2 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_16 bcd1280b locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_15 BCD1280B locus 38.1 () Automated name-based View Maps
Xbcd1280B locus 80 Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_5 Xbcd1280B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_26 Xbcd1280B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO17 Xbcd1280B locus 41.76 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-17 Xbcd1280B locus 17.3 () Automated name-based View Maps
Oat - Oat-2006-KxO-RGA - Oat-2006-KxO-RGA_KO17 Xbcd1280B locus 30 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_19 Xbcd1280B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_16 Xbcd1280B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 Xbcd1280B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2004-OxM-QTL4 - Oat-2004-OxM-QTL4_5 Xbcd1280B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_5 Xbcd1280B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Xbcd1280B locus 65.2 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_5 Xbcd1280B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_12 Xbcd1280B locus 0 (cM) Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.