*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2004-TxM
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2004-TxM_15
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2004-TxM [ View Map Set Info ]
Map Name: Oat-2004-TxM_15
Map Start: 0
Map Stop: 29
Features by Type:
31 locus
2 qtl
33 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 33.       of 2 | Next
Oat - Oat-2004-TxM - Oat-2004-TxM_15
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
acc_cta222 locus 0 No other positions
agg_cac150 locus 0 No other positions
umn575 locus 13 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 umn575 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 umn575 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 UMN575 locus 16.6 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-22 Xumn575 locus 6 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 UMN575 locus 16.6 () Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 umn575 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 umn575 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 UMN575 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 umn575 locus 26 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 umn575 locus 174 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 umn575 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 UMN575 locus 158 (cM) Automated name-based View Maps
bcd327 locus 13 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 bcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 bcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_1 bcd327 locus 24.3 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 bcd327 locus 28.24 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 BCD327 locus 167 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 BCD327 locus 175 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-22 Xbcd327 locus 4.1 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 BCD327 locus 7.48 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 bcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 BCD327 locus 17.7 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 BCD327 locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 BCD327 locus 14.9 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18 bcd327 locus 175 (cM) Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 4D bcd327 locus 35.7 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 bcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 bcd327 locus 26 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 BCD327 locus 14.9 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 bcd327 locus 26 (cM) Automated name-based View Maps
umn856a locus 13 Oat - Oat-2020-UMNF-Pc - Oat-2020-UMNF-Pc_Mrg20 UMN856A locus 18 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 umn856a locus 172 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 UMN856A locus 158 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 umn856a locus 31.76 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 UMN856A locus 0 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 UMN856A locus 18 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 UMN856A locus 18 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18 umn856a locus 172 (cM) Automated name-based View Maps
acor167a locus 13 No other positions
umn114x locus 13 No other positions
acor198 locus 13 No other positions
bcd1829z locus 13 No other positions
umn360a locus 13 Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 umn360a locus 172 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 UMN360A locus 18 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 UMN360A locus 18 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 UMN360A locus 158 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 UMN360A locus 0 (cM) Automated name-based View Maps
act_cat216c locus 13 No other positions
acg_caa103 locus 13 No other positions
aco183x locus 13 No other positions
cdo419p locus 13 No other positions
acor186 locus 13 No other positions
cdo1437b locus 13 Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo1437b locus 98.2 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO1437B locus 94 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO1437B locus 156.7 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 CDO1437B locus 146.58 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 CDO1437B locus 75 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO1437B locus 156.7 () Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 CDO1437B locus 198 () Automated name-based View Maps
acc_cta144 locus 13 No other positions
acg_caa194 locus 13 No other positions
agc_catd locus 13 No other positions
cdo1196 locus 13 Oat - Oat, KxO - Oat-KxO-22 Xcdo1196 locus 14.1 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_22 cdo1196 locus 18 (cM) Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO22_44_18 cdo1196 locus 163 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_22 CDO1196 locus 8.75 (cM) Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_22 CDO1196 locus 24.83 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 CDO1196 locus 24.8 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_22_44_18 CDO1196 locus 158 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 cdo1196 locus 18 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL3 - Oat-2003-OxM-QTL3_1 cdo1196 locus 17.6 (cM) Automated name-based View Maps
Oat - Oat-2004-KxO-RGA - Oat-2004-KxO-RGA_KO22_44+18 cdo1196 locus 40.12 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_5 cdo1196 locus 18 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 CDO1196 locus 24.8 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_8 cdo1196 locus 18 (cM) Automated name-based View Maps
Oat - Oat-2016-KxO - Oat-2016-KxO_1 CDO1196 locus 28.1 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-22_44+18 cdo1196 locus 163 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_1 cdo1196 locus 18 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_15 cdo1196 locus 18 (cM) Automated name-based View Maps
aco139x locus 13 No other positions
umn363x locus 13 No other positions
agg_caa237 locus 13 No other positions
aca_ctga locus 13 No other positions
agc_catf locus 13 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.