*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2006-OxT_Pc58
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2006-OxT_Pc58_1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2006-OxT_Pc58 [ View Map Set Info ]
Map Name: Oat-2006-OxT_Pc58_1
Map Start: 0 cM
Map Stop: 67.8 cM
Features by Type:
12 locus
12 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 12 of 12.
Oat - Oat-2006-OxT_Pc58 - Oat-2006-OxT_Pc58_1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PSR129 locus 0 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-7H PSR129 locus 125.5 () Automated name-based View Maps
Barley - Barley, HxT basemap - Hordeum-HxT-base-7H PSR129 locus 151.8 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-7 PSR129 locus 118.59 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-7H PSR129 locus 110.8 () Automated name-based View Maps
Barley - Barley, HxT - Hordeum-NABGMP2-7H PSR129 locus 162.6 () Automated name-based View Maps
Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-7 Xpsr129-7S locus 89.4 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-7H PSR129 locus 140.6 () Automated name-based View Maps
Barley - Barley, SxM, Feed QTLs - Hordeum-SxM-FeedQTL-7H PSR129 locus 127.4 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H PSR129 locus 110.6 () Automated name-based View Maps
Barley - Barley, VGxA - Hordeum-Giese1-7H PSR129 locus 98 () Automated name-based View Maps
Barley - Barley, GxHN, SFNB - Hordeum-GxHN-SFNB-7H PSR129 locus 117.6 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-7H PSR129 locus 118.59 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-7H PSR129 locus 113.2 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-7H PSR129 locus 114.06 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-7H PSR129 locus 71.57 () Automated name-based View Maps
Barley - Barley, SxM - Hordeum-NABGMP1-7H PSR129 locus 127.4 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-7H PSR129 locus 105.06 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-7H PSR129 locus 118.59 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H PSR129 locus 26.2 () Automated name-based View Maps
RZ682B locus 3.2 Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 RZ682B locus 108.3 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-33 rz682b locus 62.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 RZ682B locus 108.3 () Automated name-based View Maps
ISU77A locus 5.1 Oat - Oat, OxT - Oat-OxT-33 isu77a locus 60.3 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 ISU77A locus 97.7 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 ISU77A locus 97.7 () Automated name-based View Maps
OISU2192 locus 9.4 No other positions
RZ516C locus 10.7 Oat - Oat-2016-Consensus - Oat-2016-Consensus-33 RZ516C locus 112.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg33 RZ516C locus 112.5 () Automated name-based View Maps
RZ516D locus 14.1 Oat - Oat-2016-Consensus - Oat-2016-Consensus-17 RZ516D locus 110.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg17 RZ516D locus 110.4 () Automated name-based View Maps
Pc58b locus 18.7 Oat - Avena_2013_SNP - Avena_2013_SNP_9D Pc58b locus 80.16 () Automated name-based View Maps
Pc58c locus 56.3 Oat - Avena_2013_SNP - Avena_2013_SNP_9D Pc58c locus 78.36 () Automated name-based View Maps
PSR637 locus 59.4 Wheat S^l^ - Ae. longissima, YxY - Aelongissima-Zhang-5 Xpsr637-5S locus 35.4 () Automated name-based View Maps
Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_32 psr637 locus 0 (cM) Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-5H psr637 locus 158.23 () Automated name-based View Maps
Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 PSR637 locus 0 (cM) Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-32 psr637 locus 0 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-5H psr637 locus 104 () Automated name-based View Maps
Barley - Barley, Nure x Tremois - Hv-Nure/Tremois-5H PSR637 locus 104.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-2 PSR637 locus 10.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg02 PSR637 locus 10.8 () Automated name-based View Maps
Pc58a locus 59.7 Oat - Oat-2007-OxT-PcQTL - Oat-2007-OxT_32 Pc58a locus 0.2 (cM) Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_9D Pc58a locus 81.36 () Automated name-based View Maps
PSR160 locus 64.2 Barley - Barley, CxH - Hordeum-CxH-7H PSR160 locus 7.16 () Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswAC psr160 locus 14 (cM) Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-7H Plc locus -68.4 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-7H PSR160 locus 7.6 () Automated name-based View Maps
CDO54B locus 67.8 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.